PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023503m
Common NameEUTSA_v10023503mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 403aa    MW: 43866 Da    PI: 4.9946
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573123.11.3e-38172260297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +fqrlw+eeDei++LqG+idfka+tgksp++d++  y+f+kksisf+vsk+q+++Kir+LKkK+  k k+       +f+k+hdqk+f+l++ i
  Thhalv10023503m 172 AFQRLWTEEDEITVLQGMIDFKADTGKSPYEDTNLYYDFIKKSISFDVSKNQFMDKIRSLKKKYMSKGKT-------AFTKPHDQKSFKLCQNI 258
                      69***************************************************************99998.......9**************** PP

           DUF573  96 Wg 97 
                      Wg
  Thhalv10023503m 259 WG 260
                      *9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.4E-31173260IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSKKLNPLED PPTASSSDEE EVETSAGEEE EEDDSSSEEE DEPLASVIKP PSAAAVTIAV  60
PGKTTVPSAA KEASDSDAGS ETETDSDSET EQPSNPQGSG KSAAVTVAAS AATKPKKKEE  120
AQPSVILASP AAKAGAKRPS EGNSKEANSK RAKKVTSGDD EKKIGEDSKK PAFQRLWTEE  180
DEITVLQGMI DFKADTGKSP YEDTNLYYDF IKKSISFDVS KNQFMDKIRS LKKKYMSKGK  240
TAFTKPHDQK SFKLCQNIWG PEGMALESAV KSNGVSKKSQ KTKKLDSVKQ ELSFASSPNG  300
KAVEEDKRVL AYGGDLELPV AVKKPDWFEN SFLARSIASF GVDEYSVKQR WSLVPVENKK  360
KVEEKLKMLQ AKEIEFVLEK TQFLHEVTSM IAEASKNKTL DI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545777e-60AC254577.1 Capsella rubella clone JGIBSIA-13B13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391972.10.0probable transcription factor At1g61730
SwissprotQ9SYA91e-129STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLV4KPG50.0V4KPG5_EUTSA; Uncharacterized protein
STRINGXP_006391972.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-97DNA-binding storekeeper protein-related transcriptional regulator