PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10023507m

Common Name

EUTSA_v10023507mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 395aa MW: 42143.1 Da PI: 6.7267

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10023507m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.5	9.4e-42	49	222	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Thhalv10023507m 49 TTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpskavpl 142 579***************************************************************99988888888888666667778888 PP TCP 89 ................................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 + ++++ +++++q+ ++++ + + + + +r+r+r+++++ ++++ Thhalv10023507m 143 ygalglshhhhqyeeqggafgahtppllgfhhH-LQQHQhHQNQNQRLDQAQEETIQGTDGENFSRKRYRSEKENDDRKQN 222 8888888888899999*******99999852.44443366666666666677777777788888888666655555433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-43	53	221	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	54	108	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDLSDGAAAR GGNSRQLVDP SLSIVPRSTS LEDDTLATTS SPAVTTTVTT KRSTKDRHTK 60 VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIVAATG TGTIPANFSS 120 LSVSLRSSGS TLSAPPSKAV PLYGALGLSH HHHQYEEQGG AFGAHTPPLL GFHHHLQQHQ 180 HHQNQNQRLD QAQEETIQGT DGENFSRKRY RSEKENDDRK QNENKSLKES ESPASAAAAA 240 PMWAVAPTSR ATGGNTFWML PVPTTAGNQP AAMESSSNTN RAHMWPFVNS AGAVAGAGAA 300 THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQAMPDSNLG MLAALNAAYP RGGNANANPN 360 AEQVNNAVEH QEKQQQPQQS DPDDDSRDGN SNSD*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDLSDGAAAR GGNSRQLVDP SLSIVPRSTS LEDDTLATTS SPAVTTTVTT KRSTKDRHTK  60
VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIVAATG TGTIPANFSS  120
LSVSLRSSGS TLSAPPSKAV PLYGALGLSH HHHQYEEQGG AFGAHTPPLL GFHHHLQQHQ  180
HHQNQNQRLD QAQEETIQGT DGENFSRKRY RSEKENDDRK QNENKSLKES ESPASAAAAA  240
PMWAVAPTSR ATGGNTFWML PVPTTAGNQP AAMESSSNTN RAHMWPFVNS AGAVAGAGAA  300
THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQAMPDSNLG MLAALNAAYP RGGNANANPN  360
AEQVNNAVEH QEKQQQPQQS DPDDDSRDGN SNSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10023507m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392342.1	0.0	transcription factor TCP8
Swissprot	Q9C518	1e-171	TCP8_ARATH; Transcription factor TCP8
TrEMBL	V4KQK7	0.0	V4KQK7_EUTSA; Uncharacterized protein
STRING	XP_006392342.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-120	TCP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10023507m
Entrez Gene	18009810

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]