PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023678m
Common NameEUTSA_v10023678mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 225aa    MW: 23370.2 Da    PI: 5.3105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023678mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.2e-1660109155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+G+r ++  g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Thhalv10023678m  60 PVYRGIR-CR-GGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 109
                      68****9.55.7*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1060109IPR001471AP2/ERF domain
PROSITE profilePS5103219.83661117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-2761119IPR001471AP2/ERF domain
SMARTSM003803.6E-2861123IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1861119IPR016177DNA-binding domain
CDDcd000182.33E-1662119No hitNo description
PRINTSPR003671.4E-66273IPR001471AP2/ERF domain
PRINTSPR003671.4E-699119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGDPKNPITE NSCPLATITT THTTTSTVSF AASSSTTSGN DNDTLMATTS GTISRRKKHP  60
VYRGIRCRGG KWVSEIREPK KTTRVWLGTY PTPEMAAAAY DVAALALKGG KAVLNFPDSV  120
GSYPFPVSSS AAHIRIAAAT AAATVGAAAA NAAVKGGEKK GEETVCDVAG SSAYMEFVDE  180
EELLNMPGLL ADMAKGMMVA PPWMGSPPSD DSPENSDGES LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-13581171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023678m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391788.11e-164ethylene-responsive transcription factor ERF026
SwissprotQ9CAN91e-86ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLV4KD881e-162V4KD88_EUTSA; Uncharacterized protein
STRINGXP_006391788.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-36ERF family protein