PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023682m
Common NameEUTSA_v10023643mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 222aa    MW: 24505.6 Da    PI: 7.4516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023682mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11145192455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thhalv10023682m 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-10139196No hitNo description
Gene3DG3DSA:4.10.280.103.5E-16141197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDPSGMMNEG GPFNLAEIWQ FPFNGVSTAG DSSARGNQFA DSNLNTTTAV GDAARISHAL  60
SQAVIEGISG AWKRRDESAK VVSTTSNYNG ASEGDKKRQK IDEECDEKTE AGFSSETKMD  120
QKKQQIDPTK DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV  180
LDEIINYIQS LQRQVEVKTS VSLFSIVCLL YVHVCFVRLY L*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023682m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0282321e-105AB028232.1 Arabidopsis thaliana ZCW32 mRNA for helix-loop-helix protein homolog, complete cds.
GenBankAM2697531e-105AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
GenBankAM2697541e-105AM269754.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPEp splice form.
GenBankAY0863731e-105AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
GenBankBT0039641e-105BT003964.1 Arabidopsis thaliana clone RAFL15-08-I05 (R20798) putative bHLH protein (At1g59640) mRNA, complete cds.
GenBankBT0050641e-105BT005064.1 Arabidopsis thaliana clone U20798 putative bHLH protein (At1g59640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392265.11e-144transcription factor BPE
SwissprotQ0JXE71e-106BPE_ARATH; Transcription factor BPE
TrEMBLV4JVX11e-164V4JVX1_EUTSA; Uncharacterized protein
STRINGXP_006392265.11e-144(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-109BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]