PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023829m
Common NameEUTSA_v10023829mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 328aa    MW: 37063 Da    PI: 7.3225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023829mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k+ lC+ffa  G C  G++C F+H+
  Thhalv10023829m  3 KRILCKFFAH-GACLKGENCEFSHD 26
                     889***6666.*************5 PP
2zf-CCCH25.42.5e-083454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C +++r G+C+yG++C++ H+
  Thhalv10023829m 34 VCTYYQR-GICSYGNQCRYEHV 54
                     6999999.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3332956IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-53155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-43453IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.07118145IPR000571Zinc finger, CCCH-type
SMARTSM003561.2119144IPR000571Zinc finger, CCCH-type
PfamPF000971.1E-7168226IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008910.203168227IPR001841Zinc finger, RING-type
Gene3DG3DSA:3.30.40.101.2E-7189228IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.13E-10189233No hitNo description
CDDcd001620.00943189228No hitNo description
PROSITE patternPS005180193202IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035612256284IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.601256281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEN CEFSHDWKDP SNNVCTYYQR GICSYGNQCR YEHVKASRPH  60
PSAPSSSGVP RSPHASTSNL LALSSVPSSC LKPAWNLDSL HQDSLDEVST FNPGTAKPEE  120
QPICSYAAAS DCPHGDECLH IHGNICPTCR KHCLHPFRRE ERDEHKRVCE KKQKQLKALK  180
LSQEIDFGLL TECDHAFCIA CIRNWRSSSP STGMDVNSTL RACPICRKLS YFIVPSVIWF  240
SAPEEKKEII DNYREKLRSI DCKHFNFGDG NCPFGTSCFY KINLCIHHAY HDGRLEEVVL  300
RHLDAEDGQT VIAKDIRLSD FLEDMHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023829m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035752e-84GQ903575.1 Arabidopsis thaliana ecotype Columbia chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
GenBankGQ9035762e-84GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403739.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV4KNH60.0V4KNH6_EUTSA; Uncharacterized protein
STRINGXP_006391587.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-131C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]