PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023874m
Common NameEUTSA_v10023874mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11831.8 Da    PI: 9.9685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023874mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.9e-181244436
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaeva 36
                     +    rqvtfskRr g++KKA ELS+LC+aeva
  Thhalv10023874m 12 DHVNSRQVTFSKRRSGLFKKARELSTLCNAEVA 44
                     55568***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.24E-18149IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-16156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.465146IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-171445IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-112338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MGCAKIVIKR LDHVNSRQVT FSKRRSGLFK KARELSTLCN AEVAAMTQTL LRYENYKNSS  60
DAPLINSKAE VFQNLLYMNL RVVCFTEFSS IKQYCYVPLI INS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023874m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012192.17e-24agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392952e-21AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLV4MDG76e-70V4MDG7_EUTSA; Uncharacterized protein
STRINGXP_006392000.11e-70(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-22AGAMOUS-like 15