PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023895m
Common NameEUTSA_v10023895mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 270aa    MW: 31336.8 Da    PI: 10.0084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023895mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM301.5e-0915324535128
              NAM  35 kevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmhe 125
                      ++ + y v Pw+L   +++++      f ++r ++     r+    + g W+   +dk ++s+k++  g k+++ f +  r +++ k +W+m+e
  Thhalv10023895m 153 ESKHFYGVVPWRLMYGLESSSLqgGRLFLVNRTENC---GRTDG-CDGGCWRIMRRDKVIISEKNKILGFKRVFKFCESdRYKRSFKLTWIMEE 242
                      555778889999975443332222556777766654...36666.478*****************************764888889******** PP

              NAM 126 yrl 128
                      yrl
  Thhalv10023895m 243 YRL 245
                      *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.807113261IPR003441NAC domain
SuperFamilySSF1019411.28E-17145259IPR003441NAC domain
PfamPF023654.7E-5180245IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYCDVHAFKL GVVCFDVSLE RVEVVYRLRV YDPWRIFHAL LIARISLLLI LGLESVVCSS  60
FFVGSPVCRR VSMVRTTTVR SAEERVVAMV SYWGFTLRLS GSEHGQMIGH VTKQRSVVAP  120
RWSDELHGWF ATCEVFELQA IDRPKYWPSF FVESKHFYGV VPWRLMYGLE SSSLQGGRLF  180
LVNRTENCGR TDGCDGGCWR IMRRDKVIIS EKNKILGFKR VFKFCESDRY KRSFKLTWIM  240
EEYRLAKKST QGKVLCRIKL LDSTLLRKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023895m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632799.19e-41PREDICTED: uncharacterized protein LOC106338342
TrEMBLV4MDY40.0V4MDY4_EUTSA; Uncharacterized protein
STRINGXP_006392170.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.13e-28NAC family protein