PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023980m
Common NameEUTSA_v10023980mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 206aa    MW: 22964 Da    PI: 4.6439
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023980mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-091252545
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +  + + tf k   g  KKA+ELSvLC+  v  i +++ g 
  Thhalv10023980m 12 SRKREKATFKKMFPGFKKKASELSVLCGNSVGFICYGPGGD 52
                     56678899****************************99763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.07E-17984No hitNo description
PROSITE profilePS500669.7691151IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91351IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-121490IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAPRQKNCVD DSRKREKATF KKMFPGFKKK ASELSVLCGN SVGFICYGPG GDEDDLYVWP  60
EPQDNPQALP RLISEFNKQS NLKRQRYATQ LTDDFQYLLE GLSVEELTNH LADINSQLVG  120
IRQKKLEILI KTVPEEDGRP RVSVSENVSV SGKEVDLALG FPGGDYFPAE DPMAVKGFCG  180
DDCIWDSSQL DLEFFGFKTQ PLCGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023980m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392236.11e-151agamous-like MADS-box protein AGL49
SwissprotQ9ZUI92e-44AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLV4KI341e-149V4KI34_EUTSA; Uncharacterized protein
STRINGXP_006392236.11e-150(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.17e-47AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]