PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024128m
Common NameEUTSA_v10024128mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 144aa    MW: 16673.4 Da    PI: 9.5465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024128mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.71.3e-111810934128
              NAM  34 ikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125
                       ++  +y+++Pw      +++++ ++  F+k+++ +a+  r+     +g W+  g+dk ++s+ +g+  g k++L f +++ +++ k  Wvm+e
  Thhalv10024128m  18 WPHEYVYNLNPWITF---NNTTNpKYMVFVKSRT-EAS-GRTDDGCGAGCWRIIGRDKLIKSEeTGKILGFKRILKFCDKEMNRSDKRIWVMEE 106
                      566678999999764...2333415555655544.444.577777899*************98778889************************* PP

              NAM 126 yrl 128
                      +rl
  Thhalv10024128m 107 FRL 109
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.6981125IPR003441NAC domain
PfamPF023651.7E-610109IPR003441NAC domain
SuperFamilySSF1019412.48E-1613116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGDHPVLNHL NMMIDDSWPH EYVYNLNPWI TFNNTTNPKY MVFVKSRTEA SGRTDDGCGA  60
GCWRIIGRDK LIKSEETGKI LGFKRILKFC DKEMNRSDKR IWVMEEFRLF DKRKQDQVIG  120
LIQLLLPPAV SALLAKHFSF LPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024128m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392171.11e-105protein CUP-SHAPED COTYLEDON 1
TrEMBLV4KHX01e-103V4KHX0_EUTSA; Uncharacterized protein
STRINGXP_006392171.11e-104(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.18e-34NAC domain containing protein 23