PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024148m
Common NameEUTSA_v10024148mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 186aa    MW: 21725.5 Da    PI: 4.5211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024148mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.41.6e-114315110128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101
                      tde +++++L+  ++++        ++  +y+++Pw+     +++ + ++  F+k ++ +a+  r+     +g W+  g+dk ++s+ +g+  g
  Thhalv10024148m  43 TDERMISHHLNMMINESW-------PHEYVYNLNPWTTF---NNTPNpNYMVFVKPRT-EAS-GRTDDGCGAGCWRIIGRDKLIKSEeTGKILG 124
                      555556555555555444.......44579999**9985...2333414555555544.443.577777899*************98778889* PP

              NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                       k++L f +++ +++e+  Wvm+e+rl
  Thhalv10024148m 125 FKRILKFCDKEMRRSEERIWVMEEFRL 151
                      *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.50626167IPR003441NAC domain
PfamPF023652.4E-842151IPR003441NAC domain
SuperFamilySSF1019411.7E-1743164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEDHSISTED DDDQIEPEEE EGMEEIQYYL SSSDDDEERI PATDERMISH HLNMMINESW  60
PHEYVYNLNP WTTFNNTPNP NYMVFVKPRT EASGRTDDGC GAGCWRIIGR DKLIKSEETG  120
KILGFKRILK FCDKEMRRSE ERIWVMEEFR LADKRKQDQV MCTIQLLLLP AVSALLAKHF  180
SFLPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024148m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392198.11e-138protein CUP-SHAPED COTYLEDON 1
TrEMBLV4KEC91e-137V4KEC9_EUTSA; Uncharacterized protein
STRINGXP_006392198.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.15e-36NAC domain containing protein 23