PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024149m
Common NameEUTSA_v10024149mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 196aa    MW: 22696.4 Da    PI: 4.4747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024149mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM385.1e-125316110128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101
                      tde +++++L+  ++++        ++  +y+++Pw      +++++ ++  F+k+++ +a+  r+     +g W+  g+dk ++s+ +g+  g
  Thhalv10024149m  53 TDEKMISYHLNMMINDSW-------PHEYVYNLNPWITF---NNTTNpKYMVFVKSRT-EAS-GRTDDGCGAGCWRIIGRDKLIKSEeTGKILG 134
                      667777777766666555.......34469999999764...2333415555665554.444.577777899*************98778889* PP

              NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                       k++L f +++ +++ k  Wvm+e+rl
  Thhalv10024149m 135 FKRILKFCDKEMNRSDKRIWVMEEFRL 161
                      *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.44636177IPR003441NAC domain
PfamPF023656.0E-951161IPR003441NAC domain
SuperFamilySSF1019419.94E-1753167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEDHSVSSEG MEDHSVSSDD DDDQIEPAEE EGIEEIQYYL SSSDDNDERI EETDEKMISY  60
HLNMMINDSW PHEYVYNLNP WITFNNTTNP KYMVFVKSRT EASGRTDDGC GAGCWRIIGR  120
DKLIKSEETG KILGFKRILK FCDKEMNRSD KRIWVMEEFR LFDKRKQDQV IGLIQLLLPP  180
AVSALLAKHF SFLPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024149m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392199.11e-145protein CUP-SHAPED COTYLEDON 1
TrEMBLV4JVR91e-143V4JVR9_EUTSA; Uncharacterized protein
STRINGXP_006392199.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.18e-37NAC domain containing protein 23