PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024319m

Common Name

EUTSA_v10024319mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 974aa MW: 107862 Da PI: 6.1779

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024319m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	648	698	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Thhalv10024319m 648 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 698 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	637	718	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	651	698	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.21E-24	868	959	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-25	871	955	No hit	No description
SMART	SM00666	5.1E-28	873	956	IPR000270	PB1 domain
PROSITE profile	PS51745	29.385	873	956	IPR000270	PB1 domain
Pfam	PF00564	9.0E-19	875	955	IPR000270	PB1 domain
CDD	cd06407	1.27E-41	875	955	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MEGGGGGDGG FLPNSSLGAF SETAMDMDFM EELFFEGCWL ETTDSKSLKQ TAGQSVSDST 60 TMSDNNSFLY GYQFAENPSQ DHISNEETGR KFPPLTPGFL KIEDLANQPV NQVSFDQPAA 120 MSSAQAEKFL LEETEVGRRW WIAPRTSQGP SSSVKDRLVQ AIKGLNEAVQ DKDFLIQIWV 180 PIQQEGKNFL TTLEQPHFFN PKYLSLKRYR DVSVAYNFLA DEDSKESVGL PGRVFLGKLP 240 EWTPDVRFFR SDEYPRIKEA QKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRPEL 300 ENICKALEAV NLRSSTNLKS PSREFLQVYN HFYHAALPEV SDFLTSVCRS YELPLALTWA 360 PCARQGKGGS RHSDENFSEC VSTVDSACFV LDELSHHFLE ACSEHHLLQG EGIVGKAFKA 420 IKLFFVPEVT TFSKTNYPLA HHAKISGLHA ALAVPLKSKF NGSVEFVLEF FFPKACLDTV 480 AQQEMLKSLS ITLQQDFRSL NLVIDKDLEL EVVFPVREEV LFSEKPLIID AETGENLKPL 540 PLEEISQEDS SWISHMIKAN EKGKGVSLSW EYQKEEPKEE FMLTSGWDNN QIGQGHNNFL 600 SDTEQFQKAS NSGLRLDIDP SFDSASFGGG QPLLGSRRPG EKRRTKTEKT IGLEVLRQYF 660 AGSLKDAAKS IGVCPTTLKR ICRQHGITRW PSRKIKKVGH SLKKLQLVID SVQGVQGSIQ 720 LDSFYTSFPE LSSPNISATA TGTSFKNSDQ SRHLSAQTEN GVSAQGIAAA PRSPPSSSCS 780 HSSGSSTCCS TGANQSTNTA NTSNTLTTLM AENAGAILKR ARSEVRLHTV NYQDETRSLS 840 RTMSHKTFSE QPLYENLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PNCGFRELQQ 900 EIARRFNIDN IAPFDLKYLD DDKEWVLLTC EADLEECIDI YRSSQSRTIK ISVHEASQVK 960 LGGSFGSTGP GPS*

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MEGGGGGDGG FLPNSSLGAF SETAMDMDFM EELFFEGCWL ETTDSKSLKQ TAGQSVSDST  60
TMSDNNSFLY GYQFAENPSQ DHISNEETGR KFPPLTPGFL KIEDLANQPV NQVSFDQPAA  120
MSSAQAEKFL LEETEVGRRW WIAPRTSQGP SSSVKDRLVQ AIKGLNEAVQ DKDFLIQIWV  180
PIQQEGKNFL TTLEQPHFFN PKYLSLKRYR DVSVAYNFLA DEDSKESVGL PGRVFLGKLP  240
EWTPDVRFFR SDEYPRIKEA QKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRPEL  300
ENICKALEAV NLRSSTNLKS PSREFLQVYN HFYHAALPEV SDFLTSVCRS YELPLALTWA  360
PCARQGKGGS RHSDENFSEC VSTVDSACFV LDELSHHFLE ACSEHHLLQG EGIVGKAFKA  420
IKLFFVPEVT TFSKTNYPLA HHAKISGLHA ALAVPLKSKF NGSVEFVLEF FFPKACLDTV  480
AQQEMLKSLS ITLQQDFRSL NLVIDKDLEL EVVFPVREEV LFSEKPLIID AETGENLKPL  540
PLEEISQEDS SWISHMIKAN EKGKGVSLSW EYQKEEPKEE FMLTSGWDNN QIGQGHNNFL  600
SDTEQFQKAS NSGLRLDIDP SFDSASFGGG QPLLGSRRPG EKRRTKTEKT IGLEVLRQYF  660
AGSLKDAAKS IGVCPTTLKR ICRQHGITRW PSRKIKKVGH SLKKLQLVID SVQGVQGSIQ  720
LDSFYTSFPE LSSPNISATA TGTSFKNSDQ SRHLSAQTEN GVSAQGIAAA PRSPPSSSCS  780
HSSGSSTCCS TGANQSTNTA NTSNTLTTLM AENAGAILKR ARSEVRLHTV NYQDETRSLS  840
RTMSHKTFSE QPLYENLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PNCGFRELQQ  900
EIARRFNIDN IAPFDLKYLD DDKEWVLLTC EADLEECIDI YRSSQSRTIK ISVHEASQVK  960
LGGSFGSTGP GPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024319m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412126.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	V4MB36	0.0	V4MB36_EUTSA; Uncharacterized protein
STRING	XP_006412126.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10024319m
Entrez Gene	18028241