PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024342m

Common Name

EUTSA_v10024342mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

CAMTA

Protein Properties

Length: 918aa MW: 104029 Da PI: 7.334

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024342m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.9	5.7e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf Thhalv10024342m 30 EEaYSRWLRPNEIHALLCNHKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFV 123 55589*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL++++e+ivlvhy+e++ Thhalv10024342m 124 RRCYWLLDKSQEHIVLVHYRETH 146 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.304	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.9E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.8E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	6.02E-13	369	455	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.43E-12	555	665	No hit	No description
Pfam	PF12796	5.8E-7	556	635	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.4E-15	556	668	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.06E-14	564	670	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.681	573	638	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	7.6E-6	606	635	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	606	638	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.47E-5	720	821	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	755	781	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	770	792	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.7E-4	793	815	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.651	794	818	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.4E-4	796	815	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.8	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	870	899	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.22	871	891	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MTGDDSGKLL GSEIHGFHTL QDLDIQTMLE EAYSRWLRPN EIHALLCNHK YFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSITDHLSPK LVSEDINSGV 180 RNTCNTGYEV RSNSMVARNH EIRLHEINTL DWDELLVPAE ISNQCPPTED DVLYFTEQLQ 240 TAPRGSAKQG NHLAGYNGST DVPSYLGLGD PVYQNKNPCV AGEFSSQHSH CVADPNPSAT 300 VGDQAGDALL NNGYGSQESF GRWVNNFISD SPGSVEDPSL DGVFTPGQDS STTPASFDSH 360 SNIPEQVFNI TDVSPAWAYS TEKTKILVTG YFHESFQHFG RSNLFCICGE LRVTAEFLQM 420 GVYRCFLPPQ SPGVVNLYLS ADGNNPISQL FSFEHRSVPV IEKAIPQNDQ LYKWEEFEFQ 480 VRLAHLLFTS SNKISVFSSK ISPDNLLEAK KLASRTSHLL NSWAYLIKSI QANEVPFDQA 540 RDHLFELTLK NRLKEWLLEK VIENRNTKEY DSKGLGVIHL CAVLGYTWSI LLFSWASISL 600 DFRDKNGWTA LHWAAFYGRE KMVAALLSAG ARPNLVTDPT KEYLGGCTAA DLAQQKGYDG 660 LAAFLAEKCL VAQFSDMKIA GNITGNLEGI KAETSTNPGN ANEEEQSLKD TLAAYRTAAE 720 AAARIQGAFR EHELKVRSSA VRFASKEEEA KNIIAAMKIQ HAFRNYETRR KIAAAARIQY 780 RFQTWKMRRE FLNMRNKAIR IQAAFRGFQV RRQYQKITWS VGVLEKAILR WRLKRKGFRG 840 LQVNQPEEKE GSDTVEDFYK TSQKQAEERL ERSVVKVQAM FRSKKAQQDY RRMKLAHEEA 900 QREYDGMQEL DQMDMES*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MTGDDSGKLL GSEIHGFHTL QDLDIQTMLE EAYSRWLRPN EIHALLCNHK YFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSITDHLSPK LVSEDINSGV  180
RNTCNTGYEV RSNSMVARNH EIRLHEINTL DWDELLVPAE ISNQCPPTED DVLYFTEQLQ  240
TAPRGSAKQG NHLAGYNGST DVPSYLGLGD PVYQNKNPCV AGEFSSQHSH CVADPNPSAT  300
VGDQAGDALL NNGYGSQESF GRWVNNFISD SPGSVEDPSL DGVFTPGQDS STTPASFDSH  360
SNIPEQVFNI TDVSPAWAYS TEKTKILVTG YFHESFQHFG RSNLFCICGE LRVTAEFLQM  420
GVYRCFLPPQ SPGVVNLYLS ADGNNPISQL FSFEHRSVPV IEKAIPQNDQ LYKWEEFEFQ  480
VRLAHLLFTS SNKISVFSSK ISPDNLLEAK KLASRTSHLL NSWAYLIKSI QANEVPFDQA  540
RDHLFELTLK NRLKEWLLEK VIENRNTKEY DSKGLGVIHL CAVLGYTWSI LLFSWASISL  600
DFRDKNGWTA LHWAAFYGRE KMVAALLSAG ARPNLVTDPT KEYLGGCTAA DLAQQKGYDG  660
LAAFLAEKCL VAQFSDMKIA GNITGNLEGI KAETSTNPGN ANEEEQSLKD TLAAYRTAAE  720
AAARIQGAFR EHELKVRSSA VRFASKEEEA KNIIAAMKIQ HAFRNYETRR KIAAAARIQY  780
RFQTWKMRRE FLNMRNKAIR IQAAFRGFQV RRQYQKITWS VGVLEKAILR WRLKRKGFRG  840
LQVNQPEEKE GSDTVEDFYK TSQKQAEERL ERSVVKVQAM FRSKKAQQDY RRMKLAHEEA  900
QREYDGMQEL DQMDMES*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024342m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414383.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	V4P888	0.0	V4P888_EUTSA; Uncharacterized protein
STRING	XP_006414383.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Thhalv10024342m
Entrez Gene	18031060

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]