PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024475m
Common NameEUTSA_v10024475mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 772aa    MW: 89378.8 Da    PI: 6.4107
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024475mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.42.1e-2736136291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       Y+eYAk+vGF++ +++s++s+++g++++++fvCs++g++++e+++           +++ r +r++++t+Cka+l+vk ++dgkw++ +l +e
  Thhalv10024475m  36 LYKEYAKSVGFTTIVKASRRSRMTGKFIDAKFVCSRYGSKKPEEEEegiegcnipqaRKRGRINRSSSKTDCKACLHVKIRQDGKWVIRTLIKE 129
                      7******************************************9999*******998889999******************************* PP

             FAR1  85 HnHelap 91 
                      HnHe++p
  Thhalv10024475m 130 HNHEVFP 136
                      ****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2536136IPR004330FAR1 DNA binding domain
PfamPF105518.6E-22224315IPR018289MULE transposase domain
PROSITE profilePS5096610.2507543IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6518545IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-5520541IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MGIDLEMPSG ECDDQMLNSG INEGIEFESK EEAFELYKEY AKSVGFTTIV KASRRSRMTG  60
KFIDAKFVCS RYGSKKPEEE EEGIEGCNIP QARKRGRINR SSSKTDCKAC LHVKIRQDGK  120
WVIRTLIKEH NHEVFPGQVN CMKESRGRKK LEKQSGDTVK EMKIRKALAL EDGDVERLLN  180
FFTDMQVENP FFFYAIDLNE EQSLRNIFWV DAKGRLDYTF FCDVVSIDTT FIKNGYKLPL  240
VAFIGVNHHG QFLLLGSGLL LTDECKSGFV WLFRSWLKSM QGCQPRVILT KHDQTLKEAV  300
SEAFPSSRHC FYMWDTLGQM PEKLGHVMRQ EKSFMDEINE AIYGSCKSVE FEKKWWEVVD  360
RFRVRDNGWL NSLYEDREYW VPVYMKGVSL AGMCTAQRLD SVNSVFDKYV HRKTTLKAFL  420
DQYKTMIQER YEEEEKAEIE TLYKQPGLKS PSPFGKQMAE VYTREMFKKF QVEVLGGVAC  480
HPKKEGEEDG VNKRTFRVKD YEQNRAFIVE WNSESSEVVC SCRLFEFKGF LCRHAMIVLQ  540
MSGELTIPSQ YVLKRWTKDA KSREVVESDQ IDGESTKAQR YTDLCLRSLK LSEEASFSEE  600
SYNAVMNVLN EAFRNCENTS NVIHNVEESD SVVAQDPSRH EEHNNSFDEN VADTGQEHSL  660
HEVWKATALQ EQRNRYSILD DYLSAQQMSH EMGQISMMAS NRNGHCTAHQ NLHSLGQSIN  720
QQRLYGTEQL SFRPEAMYER LQDMGESSFR HHPQQNCNSS KQQQSNRNFS H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153GRKKLEKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024475m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528390.0AK352839.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413913.10.0protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLV4P7110.0V4P711_EUTSA; Uncharacterized protein
STRINGXP_006413913.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1