PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024493m

Common Name

EUTSA_v10024328mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 759aa MW: 83653.3 Da PI: 6.2344

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024493m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.7e-29	387	437	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Thhalv10024493m 387 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 437 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	376	457	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-26	389	437	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.49E-23	659	747	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-27	662	743	No hit	No description
Pfam	PF00564	1.4E-20	662	743	IPR000270	PB1 domain
SMART	SM00666	1.6E-28	662	744	IPR000270	PB1 domain
PROSITE profile	PS51745	27.83	662	744	IPR000270	PB1 domain
CDD	cd06407	3.15E-34	663	743	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MISLTYMFSV DSESDIELGL PGRVFRQKLP EWTPNVQYYS SKEFSRLDHA LHYNVRGTLA 60 LPVFNLSGES CIGVVELIMT SEKIHYAPEV DRVCKALEAV NLKSSEILDH QTTQICNESR 120 QNALAEILEV LTVVCETHNL PLAQTWVPCQ HGSVLANGGG LKKNCTSFDG SCMGQVCMST 180 TDMACYVVDA HVWGFRDACL EHHLQKGQGV AGRAFLNGGS CFCRDITKFC KTQYPLVHYA 240 LMFKLTTCFA ISLQSSYTGD DSYILEFFLP SSITDDQEQD ALLGSLLVTM KEHFQSLRVA 300 SGVDFGEDDD KLSFEIIRAL PDKKIHSKIE SIRVPFSGFK SNATETLLIP QHAVQSSDPV 360 NEKSNVATVN GVVKEKKKTE KKRGKTEKTI SLDVLQQYFT GSLKDAAKSL GVCPTTMKRI 420 CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL TSMAVSSIPW THGHQTAAQP 480 LNSPSGSKPP ELPNTDNSPN HWSSDHSPHE PNGSPELPNN GHKRSRTADE SAGTPTSHGS 540 CDGNQLDETK VLNQDPLFTV GGSPGLFFPP YSRDHDVSAA SFSLPNRLLG TIDHFRGMPI 600 EDAGSSKDLR NLCSTAAFED KFPDSNWMTN DNNSNNNNIY APPKEEAIVN ITREPSGSEM 660 RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG TFDIKYLDDD NEWVLIACDA 720 DLQECLEIPR SSRTNIVRLL VHDATTNLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MISLTYMFSV DSESDIELGL PGRVFRQKLP EWTPNVQYYS SKEFSRLDHA LHYNVRGTLA  60
LPVFNLSGES CIGVVELIMT SEKIHYAPEV DRVCKALEAV NLKSSEILDH QTTQICNESR  120
QNALAEILEV LTVVCETHNL PLAQTWVPCQ HGSVLANGGG LKKNCTSFDG SCMGQVCMST  180
TDMACYVVDA HVWGFRDACL EHHLQKGQGV AGRAFLNGGS CFCRDITKFC KTQYPLVHYA  240
LMFKLTTCFA ISLQSSYTGD DSYILEFFLP SSITDDQEQD ALLGSLLVTM KEHFQSLRVA  300
SGVDFGEDDD KLSFEIIRAL PDKKIHSKIE SIRVPFSGFK SNATETLLIP QHAVQSSDPV  360
NEKSNVATVN GVVKEKKKTE KKRGKTEKTI SLDVLQQYFT GSLKDAAKSL GVCPTTMKRI  420
CRQHGISRWP SRKIKKVNRS ITKLKRVIES VQGTDGGLDL TSMAVSSIPW THGHQTAAQP  480
LNSPSGSKPP ELPNTDNSPN HWSSDHSPHE PNGSPELPNN GHKRSRTADE SAGTPTSHGS  540
CDGNQLDETK VLNQDPLFTV GGSPGLFFPP YSRDHDVSAA SFSLPNRLLG TIDHFRGMPI  600
EDAGSSKDLR NLCSTAAFED KFPDSNWMTN DNNSNNNNIY APPKEEAIVN ITREPSGSEM  660
RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG TFDIKYLDDD NEWVLIACDA  720
DLQECLEIPR SSRTNIVRLL VHDATTNLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024493m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413484.1	0.0	protein NLP7
Refseq	XP_024005488.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MPG8	0.0	V4MPG8_EUTSA; Uncharacterized protein
STRING	XP_006413484.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Thhalv10024493m
Entrez Gene	18030707

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]