PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10024524m

Common Name

EUTSA_v10024524mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 730aa MW: 81385.6 Da PI: 7.3724

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024524m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	462	513	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Thhalv10024524m 462 AEKDITLEILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 513 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	7.4E-5	216	365	IPR029016	GAF domain-like
SuperFamily	SSF55781	9.38E-8	257	366	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.268	449	533	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	466	513	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-21	636	725	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-22	636	723	No hit	No description
SMART	SM00666	1.3E-25	639	724	IPR000270	PB1 domain
PROSITE profile	PS51745	27.366	639	724	IPR000270	PB1 domain
Pfam	PF00564	1.0E-19	640	723	IPR000270	PB1 domain
CDD	cd06407	5.01E-42	640	723	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MLMEESNNSG VVDFPENFMY QLLWEEEEEA SSSSLSLGLK ERVTCAMGHL QEVMGGEKEL 60 LIQLWVPVVK RGMRRVLSTE DQPYSLNPFS QSLALYRDVS AGYSFAAEVG SDQLVGLPGR 120 VFLRRIPEWT PDVRFFRSEE YPRIGYARRY HVRASLALPL FQGPSENCVA VMEMVTTDHS 180 LEYASQLHTI CHALQAFDLR SSETSIIVPP SLKPHTDDLH REVASILHGI CSSYGLPLAI 240 TWCHQDSCLS AIVSACYAAD QDSRCFLAAC SAHHLLAGEG IAGTAFATKK PCFATDVAIL 300 SKWSYPLSHY ARMFDFHAAL AVPLLTTRGN RSVLFVLEFF FPRDCRLETH TQRLTLDSLA 360 SQLSVRFQGS PHLTVDGQLP EEFRDTPTPL RYHSRSAEQL FAEELSSCMD PEAKDHKGKQ 420 VSVSWEYQRE ELNLGGGVRE PSFTSLSSSS SSLENRKRKT KAEKDITLEI LRQHFAGSLK 480 DAAKNIGVCP TTLKRICRQH GISRWPSRKI KKVGHSLRKL QVVMDSVEGV QGSLHLASFY 540 SSFPQLQSST SSFSLLNPTQ TVHVPPKSPP SSSGSQNSSG SSACYSSEEQ QLGGLHKPAL 600 SHPQLLTLSS LQEEQRPVRV TSSLPPLPSA TAPRKAKDAM KVKAAFGDSK MRMSLQPHWR 660 LTDLRREIAK RFGIDDHLRS NFSLKYLDDD QEWVLLTCDA DLEECIQVCK SSLKETIRIL 720 VHHPLSSFV*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MLMEESNNSG VVDFPENFMY QLLWEEEEEA SSSSLSLGLK ERVTCAMGHL QEVMGGEKEL  60
LIQLWVPVVK RGMRRVLSTE DQPYSLNPFS QSLALYRDVS AGYSFAAEVG SDQLVGLPGR  120
VFLRRIPEWT PDVRFFRSEE YPRIGYARRY HVRASLALPL FQGPSENCVA VMEMVTTDHS  180
LEYASQLHTI CHALQAFDLR SSETSIIVPP SLKPHTDDLH REVASILHGI CSSYGLPLAI  240
TWCHQDSCLS AIVSACYAAD QDSRCFLAAC SAHHLLAGEG IAGTAFATKK PCFATDVAIL  300
SKWSYPLSHY ARMFDFHAAL AVPLLTTRGN RSVLFVLEFF FPRDCRLETH TQRLTLDSLA  360
SQLSVRFQGS PHLTVDGQLP EEFRDTPTPL RYHSRSAEQL FAEELSSCMD PEAKDHKGKQ  420
VSVSWEYQRE ELNLGGGVRE PSFTSLSSSS SSLENRKRKT KAEKDITLEI LRQHFAGSLK  480
DAAKNIGVCP TTLKRICRQH GISRWPSRKI KKVGHSLRKL QVVMDSVEGV QGSLHLASFY  540
SSFPQLQSST SSFSLLNPTQ TVHVPPKSPP SSSGSQNSSG SSACYSSEEQ QLGGLHKPAL  600
SHPQLLTLSS LQEEQRPVRV TSSLPPLPSA TAPRKAKDAM KVKAAFGDSK MRMSLQPHWR  660
LTDLRREIAK RFGIDDHLRS NFSLKYLDDD QEWVLLTCDA DLEECIQVCK SSLKETIRIL  720
VHHPLSSFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	VKRGMRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024524m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411620.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	V4MK94	0.0	V4MK94_EUTSA; Uncharacterized protein
STRING	XP_006411620.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10024524m
Entrez Gene	18028792

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]