PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024698m
Common NameEUTSA_v10024526mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 612aa    MW: 67877.5 Da    PI: 8.4764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024698mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-16218313598
                      -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d+ g++W++++++  +++s+ yvl+ G     ++ +L++gD+v+F++++  e++l +
  Thhalv10024698m 218 LSASDTGRVGRLVLPKKYAEAFlpRLSNTEGVPLKVQDSMGKVWTFQFRFwpSNNSRIYVLE-GVTPCIQSMQLQAGDTVIFSRVD-PERKLIM 309
                      67899*******************88889999*****************9455555559999.********************776.6666666 PP

                      EEE- CS
               B3  95 kvfr 98 
                      ++++
  Thhalv10024698m 310 GFRK 313
                      6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.87214315IPR003340B3 DNA binding domain
SMARTSM010191.5E-14215315IPR003340B3 DNA binding domain
SuperFamilySSF1019361.11E-17216313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-24217324IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-18218313No hitNo description
PfamPF023622.6E-13218313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MLLDVGGIEC LACARKKVAL GPNYLPQLPI FFQSPIAEKF KDLSINWNSS TGSNQISCRP  60
PSFLGQSVLQ FDLHNRGDSY EFSRPTSKDR ATACSIEKKW GMNDLMGKLM SEKSKSHTSD  120
ILNNQNAGPN CEVLPSSNVN VYRPLISLKE GPCGTQLAYP VPLTTPIETN VHSRLNGRSL  180
WHTPKSSSLN FLRNDLNGGA DSLCSLTHLD TPGKYQMLSA SDTGRVGRLV LPKKYAEAFL  240
PRLSNTEGVP LKVQDSMGKV WTFQFRFWPS NNSRIYVLEG VTPCIQSMQL QAGDTVIFSR  300
VDPERKLIMG FRKASVAQSA DQETDSTNNN RDSCTNGDGE SIDNHSPSRA KKSAYKAKET  360
PGVGFSSRKK KSSMMITRSK RQKVEKGDHT ELKLTWEEAQ GFILPPPSLT PSIIKIEGFE  420
FEEYKDAPII GKPTTGSTCS ANKKLLAEQY DEEAMEETEG LMMSPKETTK HPRHRRGCTC  480
IVCIQSPSGT SPKHDNCCSC TVCDAVKRRR RSLLLGRKNK QIEKENKAQK ELESLNSDEE  540
LHQSANNSGT TSKSHEHDAS PQKGQIDLNF QPEKEEESLH KTTKDKSLHH DDTSFKPSSS  600
SSAHSQIEKQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-4621831728127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024698m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322981e-59KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005764.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor VAL3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLV4P6M60.0V4P6M6_EUTSA; Uncharacterized protein
STRINGXP_006413764.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3