PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024778m
Common NameEUTSA_v10024481mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 576aa    MW: 64277.1 Da    PI: 7.9402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024778mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18273372198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  Thhalv10024778m 273 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEG 364
                      99**************************555566778***************9989999999***9.********************654.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv++ ++
  Thhalv10024778m 365 KLVMGYRK 372
                      77777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-30268376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20270373IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-23271372No hitNo description
PROSITE profilePS5086311.053273374IPR003340B3 DNA binding domain
SMARTSM010194.9E-20273373IPR003340B3 DNA binding domain
PfamPF023628.5E-16273372IPR003340B3 DNA binding domain
PROSITE profilePS5105014.779502552IPR011124Zinc finger, CW-type
PfamPF074962.4E-13507549IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MESTKVCMNA QCGAASTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR  60
ECNSCDKRLH CGCIASRFMM ELLDNGGVSC ISCAKKSGFF SMNVNHEANG RGFPSFASPE  120
HGTNLKHLLH FQRIGSTQSF FQMKQEDSLL PALRHKTEKQ ELSAQPNLSI SLGFTSPFHD  180
AVVDDTSKAT PIFQLAPRSR QLLPKPANSA PTSAGMEPNG SLVSQIHVAR PPPEGRGKTQ  240
LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP  300
PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT  360
EPEGKLVMGY RKATNSTAAQ MFKGSSEPNL SMFNNNLSPG CGDINWSKLE KPEDMAKDNL  420
LLQPSLTSAR KRVRNIGNKS KRLLIDSVDA LDLRVTWEET QDLLRPPQSV KPSICTVEDY  480
DFEEYDEPPV FGKRTVFVSR QTGEQEQWVQ CDACGKWRRL PVDTLLPPKW LCSDNVLDPG  540
RSSCSAPDEL SPREQDTLIR LSKGMILNHY RSVTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-672473802131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024778m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065540.0AB206554.1 Arabidopsis thaliana HSI2-L1 mRNA for transcription factor B3-EAR motif family, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412526.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLV4MMG60.0V4MMG6_EUTSA; Uncharacterized protein
STRINGXP_006412526.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]