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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10024887m |
| Common Name | EUTSA_v10024887mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
GRAS |
| Protein Properties |
Length: 533aa MW: 58510.2 Da PI: 5.898 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10024887m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 401.8 | 7.1e-123 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l+e+L+e A+av++gd + a ++ l++++s +g+p+qRl ay++e+L+arl +s+s++y+al+++e + e ++++ +++e++P+ kf+
Thhalv10024887m 155 LKEVLVEGARAVADGDSATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGSNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFA 245
5789*****************************************************************9...99999999************* PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
+ +aN aIlea++ge+r+HiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +ge+L+k+A+++gvpfef+ + +
Thhalv10024887m 246 YTAANAAILEATAGENRIHIIDFQIAQGSQYMFLIQELGKRPGGPPLLRVTGVDDSQSNyaRGGGLSLVGEKLSKMAQSCGVPFEFHD-AIMSG 338
*******************************************************999999999************************.78889 PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr+++
Thhalv10024887m 339 CKVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDK 432
9999****************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF + p+s++aa a+ +l+ ++++ y++ ++g+l+l Wk+r++ ++SaW+
Thhalv10024887m 433 QRISAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFMSWPVSSTAAFAASEMLKGYDKN-YKLGGSEGALYLFWKRRAMATCSAWK 525
*****************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQMID SNGFSDIPSK ENFFTLESST ASGSLPSYDS 60
PSVSITSGRS PFSPQGSQSC ISDLHPSPEN VYGSPLSGAS SYVYDEAGVR SKIRELEVSL 120
LSGDTKVEEF SGFSPAAGKS WNWDELLALT PKLDLKEVLV EGARAVADGD SATACGFIDV 180
LEQMVSVSGS PIQRLGAYMA EGLRARLEGS GSNIYRALKC NEPTGRELMS YMGVLYEICP 240
YWKFAYTAAN AAILEATAGE NRIHIIDFQI AQGSQYMFLI QELGKRPGGP PLLRVTGVDD 300
SQSNYARGGG LSLVGEKLSK MAQSCGVPFE FHDAIMSGCK VHREHLGVEP GFAVVVNFPY 360
VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420
ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGKWRVR MMMAGFMSWP 480
VSSTAAFAAS EMLKGYDKNY KLGGSEGALY LFWKRRAMAT CSAWKPNPNQ IG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352818 | 0.0 | AK352818.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N11. |
