PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024893m
Common NameEUTSA_v10024893mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 531aa    MW: 60407.4 Da    PI: 6.4607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024893mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.8e-1322891695
                     EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     l+l  +f++++ +       + l++  s r Wevkl  ++++    l++GW+eF+  ++ ++gD++vF++d++++f+  v+
  Thhalv10024893m 22 LTLDDEFLRHYTK-------VLLRSdASDRIWEVKL--NGNR----LAGGWEEFAAVHRFRDGDVLVFRHDKDENFHVSVG 89
                     6777777777753.......445443999*******..9998....***********************999898854444 PP
2B363.33.8e-20156252198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+++ +++++l ++rl l+++f+ +   +   +++ ++ l +e+gr+W++ l+ + + g +++++GW +F+++n+L++gD + Fkl++ +++++
  Thhalv10024893m 156 FITAHVTPYSLIKDRLDLSRNFTVASfdE--DNKPCEIDLANEKGRKWTLLLRRNISTGVFYIRRGWTNFCSSNELRQGDLCKFKLSE-NGERP 246
                      7888999***************9888444..456779***************88888888*************************987.66668 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      v+ ++ 
  Thhalv10024893m 247 VLWLCP 252
                      887775 PP
3B368.97e-22295392199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+k+ ++++ +ksg+l+++  f++e g+++++  ++tl +++gr+W+ +l +++k g+  ++l+kGWke++kang+k++D++v++l++ +++++
  Thhalv10024893m 295 FLKIKLTPNRFKSGQLYISSVFVNESGINNAG--EITLLNKDGRKWSSYLHMTGKCGTewFYLRKGWKEMCKANGVKVNDSFVLELIW-EDANP 385
                      899999********************999766..8***************9977776678****************************.89999 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      ++k+++k
  Thhalv10024893m 386 TFKFYSK 392
                      *999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-121092IPR003340B3 DNA binding domain
CDDcd100177.19E-102288No hitNo description
SuperFamilySSF1019365.49E-112788IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-123388IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.7713492IPR003340B3 DNA binding domain
PfamPF023622.6E-73590IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-18150253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18153254IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-18154252No hitNo description
SMARTSM010192.3E-24156254IPR003340B3 DNA binding domain
PROSITE profilePS5086315.185156253IPR003340B3 DNA binding domain
PfamPF023626.5E-18156252IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-16294387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-17294392IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-26295393IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38295393IPR003340B3 DNA binding domain
PfamPF023625.2E-23295392IPR003340B3 DNA binding domain
CDDcd100176.23E-16295391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MADPPNISLF HQRFLTGDNP LLTLDDEFLR HYTKVLLRSD ASDRIWEVKL NGNRLAGGWE  60
EFAAVHRFRD GDVLVFRHDK DENFHVSVGS RSDSCDMQHA SPSIVDTDDT EIDDDYVESA  120
DHHDDGEDED EDDAGDIVVS KNKKPEAESS SGDPCFITAH VTPYSLIKDR LDLSRNFTVA  180
SFDEDNKPCE IDLANEKGRK WTLLLRRNIS TGVFYIRRGW TNFCSSNELR QGDLCKFKLS  240
ENGERPVLWL CPQEYGNGHE EQECPRVSAE GGCSKEKSML DEIPKGKEKN TPSTFLKIKL  300
TPNRFKSGQL YISSVFVNES GINNAGEITL LNKDGRKWSS YLHMTGKCGT EWFYLRKGWK  360
EMCKANGVKV NDSFVLELIW EDANPTFKFY SKEENHENKG KGNRRTRKRR ACGTDLQGSS  420
EEKSRRVERE GRRVSRRAEH DEKEKRGNTQ VSNRPTTNSS KLQRKQAKPC SVSDQVANVK  480
RGILDTLKTV SQFRAELETR EKKLEAALLE IEALGERILG ISQILNNNLV *
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024893m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412578.10.0B3 domain-containing protein REM1
SwissprotQ84J390.0REM1_ARATH; B3 domain-containing protein REM1
TrEMBLV4P3P10.0V4P3P1_EUTSA; Uncharacterized protein
STRINGXP_006412578.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-165B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]