PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024948m
Common NameEUTSA_v10024751mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 514aa    MW: 58522.6 Da    PI: 4.8986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024948mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09445486144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + ++ +Rt++q+k+++
  Thhalv10024948m 445 RTRWSKQDTELFYEGIQEFGSN-LSMVQQLFP-NRTREQIKLKF 486
                      78******************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.6E-23438506No hitNo description
Gene3DG3DSA:1.10.10.601.9E-6441487IPR009057Homeodomain-like
PROSITE profilePS5129310.461443494IPR017884SANT domain
SMARTSM007171.1E-8444492IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-9446496IPR009057Homeodomain-like
CDDcd001671.66E-5447487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDLDFDDQPL DHAAPAAKAG ARFKPKGRPQ PKKKQVSLLT SQPTLPTDVA KEKLSTQSEH  60
LVSVDASSAY PNKFSTSETI VPDSGTINQS TGGTISKENV DVFLGRVSWC MEPSVLRACT  120
NVNLEGKRCD DGINPDDPRA QDSAAFGDFV TPETDEVIRV QTQRMQTREE ESHLDMETLD  180
IVQEEGMTRA YEHHTGKFQP KPRLLDTVIE EPESHYSVDD TGYFTTGTNE SEFMANVESR  240
NDFNTNTTFY RELQEEPRET VPEMEAQNAS GGREHEERTN NTVIGEEENC LGSTVEERPG  300
RERKKGRSKG ATARKRKITG EEDPNKTSEN PQKKKFKHSS RRQRKRTVEK ELLETPDDEI  360
RFLPIKDMLR LVEYKEWMEK KEAKGAAVVP PAQESNTNAS DNQYYSQGFD AEDEFGIEEN  420
ENQETNVVKP DSPVNYQTYM NKTSRTRWSK QDTELFYEGI QEFGSNLSMV QQLFPNRTRE  480
QIKLKFKLEE RRYPLKLNDA LSSRSNTLLT SRM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302316RKKGRSKGATARKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024948m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005819.10.0transcription factor TFIIIB component B'' homolog
TrEMBLV4LRF90.0V4LRF9_EUTSA; Uncharacterized protein
STRINGXP_006411718.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein