PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025054m
Common NameEUTSA_v10025054mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 485aa    MW: 53587.8 Da    PI: 4.9667
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025054mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.92e-1001214832374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L++++++++s++l+ a+ +L+rl ++ +sp+g+p+qR+a+yf+eAL + l++     ++  p + +s+++ ++++ a k fs +sPi+ fs
  Thhalv10025054m 121 IEDLIRVVDCIESDELQIAHVILSRLGQRlRSPAGRPLQRAAFYFKEALGSLLTG-----SNRNPNRLSSWSEIVQKIRAIKEFSGISPIPLFS 209
                      678*************************99*************************.....8888999999999********************* PP

             GRAS  95 hltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      h+taNqaIl++++++     vH++Dfdi+ G+Q+++L++++a+++ +   +R+T+v+++e   + e++ ++e+L++fA+e++++f+++++++k+
  Thhalv10025054m 210 HFTANQAILDSLSSQsssPFVHVVDFDIGFGGQYASLMREIAEKSVSGGFMRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLMKT 301
                      ************99977789**************************************66..9******************************* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                      +e+l+++++r+  gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p
  Thhalv10025054m 302 FEMLSFKAIRFVDGERTVVLISPAIFRRL-------SGIADFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAP 388
                      ****************************9.......34556*******************76677899************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      + +  ++ vE+++l+++i+ +v ++ ++   r+   ++Wre++ +aG++p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++
  Thhalv10025054m 389 PGDLVKKIVEAFVLRPKISAAVETAADR---RNVGEMTWREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVAT 479
                      ***********************99998...89999********************************************************** PP

             GRAS 371 SaWr 374
                      S Wr
  Thhalv10025054m 480 SPWR 483
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.75594463IPR005202Transcription factor GRAS
PfamPF035147.0E-98121483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MKIPASSPQE PTNTTNNNTN SSDGNQLSMD EHVMRSMDWD SIMKELELDD DSAPNSLKTG  60
FTTTDSAIGP LYAVDSNLPG FPDQIQPSDF ESSDVYPAHN QTAGYGFGSL DSVDNGGFDF  120
IEDLIRVVDC IESDELQIAH VILSRLGQRL RSPAGRPLQR AAFYFKEALG SLLTGSNRNP  180
NRLSSWSEIV QKIRAIKEFS GISPIPLFSH FTANQAILDS LSSQSSSPFV HVVDFDIGFG  240
GQYASLMREI AEKSVSGGFM RVTAVVAEEC AVETRLVKEN LTQFAAEMKI RFQIEFVLMK  300
TFEMLSFKAI RFVDGERTVV LISPAIFRRL SGIADFVNNL RRVSPKVVVF VDSEGWTEIA  360
GSGSFRREFV SALEFYTMVL ESLDAAAPPG DLVKKIVEAF VLRPKISAAV ETAADRRNVG  420
EMTWREAFCA AGMRPIQLSQ FADFQAECLL EKAQVRGFHV AKRQGELVLC WHGRALVATS  480
PWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2812648224377Protein SCARECROW
5b3h_D1e-2812648224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025054m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411970.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV4ML230.0V4ML23_EUTSA; Uncharacterized protein
STRINGXP_006411970.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]