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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Thhalv10025105m | ||||||||
| Common Name | EUTSA_v10025105mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | B3 | ||||||||
| Protein Properties | Length: 471aa MW: 52742 Da PI: 10.6386 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 67.3 | 2.2e-21 | 18 | 98 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
l + ++s+ l +p kf+++h +g k+e+kt+tl++ +s r+W+vk+ ++++ lt+GWkeFvka++L+ gDfvvF+++g++ f +v+
Thhalv10025105m 18 L--LSRFQSH-LKIPVKFFSKHiEG-KHEGKTVTLTSdSSKRTWKVKM--EGHR----LTDGWKEFVKAHDLRIGDFVVFRHEGDMLF--HVT 98
5..5667777.9**********644.467889*99996777*******..6666....***********************9998888..665 PP
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| 2 | B3 | 61.2 | 1.7e-19 | 126 | 219 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
f++ +++++l+++ + +p +fa+++g++k + ++++l++++g sW+ +++ + + g++++ ++W++F+ an+L++gD++ F+l + +++++v++
Thhalv10025105m 126 FSQIVTASNLSRAVVGVPIDFARRNGLDKGR-QKIVLMNKKGMSWKSEVK-TSTAGQVFICRNWRSFCTANKLEVGDSFKFQLLQ-NTETPVFQ 216
678899**********************876.5****************4.55666699999********************998.66669999 PP
EE- CS
B3 96 vfr 98
+++
Thhalv10025105m 217 LCS 219
986 PP
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| 3 | B3 | 63.3 | 3.8e-20 | 224 | 303 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
lp+kf++ g++k +sk+++l +e+ r W++ l++r + +++++++GW++F+++ngLk gD+ +Fkl+++s++++++++ +
Thhalv10025105m 224 LPRKFVRPDGLNK-SSKKISLINEDARIWTLILKFRESTRTFYMRSGWRSFCRENGLKPGDSATFKLESNSTGRPLLSFSS 303
9*****9999997.789***************************************************9999999998765 PP
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| 4 | B3 | 54.9 | 1.6e-17 | 368 | 467 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93
f++ +++ ++k++r++lpk+f++++g++++++k +tl d + +W v+l + k+s+r+ l++G eF +a g+++ ++v++l+++ ++ +v
Thhalv10025105m 368 FVTLNVTPGTFKHCRIYLPKSFTRNNGMENAQGKNVTLLDNHRVEWPVNLVMLKGSRRMHLGSGLIEFLRAIGVEAYKSFVLELVWEdKTSPPV 461
778889999******************9*********************************************************998999999 PP
EEEE-S CS
B3 94 vkvfrk 99
+k+++k
Thhalv10025105m 462 LKFCSK 467
999986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 9.2E-26 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.53E-22 | 9 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.874 | 11 | 103 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 6.34E-18 | 12 | 98 | No hit | No description |
| SMART | SM01019 | 2.0E-25 | 14 | 103 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.3E-16 | 20 | 95 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.7E-21 | 118 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.55E-20 | 119 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.408 | 125 | 221 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 3.83E-15 | 125 | 219 | No hit | No description |
| Pfam | PF02362 | 3.7E-19 | 126 | 219 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.3E-22 | 126 | 221 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.31E-15 | 210 | 290 | No hit | No description |
| SMART | SM01019 | 2.5E-14 | 222 | 305 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 6.47E-16 | 223 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 14.283 | 224 | 305 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.9E-16 | 224 | 302 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.3E-14 | 224 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 3.1E-12 | 360 | 465 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.14E-13 | 364 | 465 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 2.1E-17 | 368 | 467 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 9.784 | 368 | 467 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.0E-17 | 368 | 468 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 7.54E-10 | 379 | 455 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 471 aa Download sequence Send to blast |
MANASLFSPA NPHFFQPLLS RFQSHLKIPV KFFSKHIEGK HEGKTVTLTS DSSKRTWKVK 60 MEGHRLTDGW KEFVKAHDLR IGDFVVFRHE GDMLFHVTAL GTGESSRKEN DLKRESDQSS 120 SDLTCFSQIV TASNLSRAVV GVPIDFARRN GLDKGRQKIV LMNKKGMSWK SEVKTSTAGQ 180 VFICRNWRSF CTANKLEVGD SFKFQLLQNT ETPVFQLCSL AEFLPRKFVR PDGLNKSSKK 240 ISLINEDARI WTLILKFRES TRTFYMRSGW RSFCRENGLK PGDSATFKLE SNSTGRPLLS 300 FSSSESKCVS KKHINKWKRI ETGESSQRVS PPSSSSSSSS SSSSSSSSSS SSSSSSSSSS 360 CSQSESRFVT LNVTPGTFKH CRIYLPKSFT RNNGMENAQG KNVTLLDNHR VEWPVNLVML 420 KGSRRMHLGS GLIEFLRAIG VEAYKSFVLE LVWEDKTSPP VLKFCSKVNI * |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10025105m |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024004429.1 | 1e-153 | B3 domain-containing protein REM6 | ||||
| Swissprot | O81782 | 1e-138 | REM6_ARATH; B3 domain-containing protein REM6 | ||||
| TrEMBL | V4P3N9 | 0.0 | V4P3N9_EUTSA; Uncharacterized protein | ||||
| STRING | XP_006412573.1 | 0.0 | (Eutrema salsugineum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM204 | 22 | 261 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G31690.1 | 1e-115 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Thhalv10025105m |
| Entrez Gene | 18030221 |
| Publications ? help Back to Top | |||
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