PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025105m
Common NameEUTSA_v10025105mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 471aa    MW: 52742 Da    PI: 10.6386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025105mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.2e-211898595
                     -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     l   + ++s+ l +p kf+++h +g k+e+kt+tl++ +s r+W+vk+  ++++    lt+GWkeFvka++L+ gDfvvF+++g++ f  +v+
  Thhalv10025105m 18 L--LSRFQSH-LKIPVKFFSKHiEG-KHEGKTVTLTSdSSKRTWKVKM--EGHR----LTDGWKEFVKAHDLRIGDFVVFRHEGDMLF--HVT 98
                     5..5667777.9**********644.467889*99996777*******..6666....***********************9998888..665 PP

2B361.21.7e-19126219298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f++ +++++l+++ + +p +fa+++g++k + ++++l++++g sW+ +++ + + g++++ ++W++F+ an+L++gD++ F+l + +++++v++
  Thhalv10025105m 126 FSQIVTASNLSRAVVGVPIDFARRNGLDKGR-QKIVLMNKKGMSWKSEVK-TSTAGQVFICRNWRSFCTANKLEVGDSFKFQLLQ-NTETPVFQ 216
                      678899**********************876.5****************4.55666699999********************998.66669999 PP

                      EE- CS
               B3  96 vfr 98 
                      +++
  Thhalv10025105m 217 LCS 219
                      986 PP

3B363.33.8e-202243031898
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      lp+kf++  g++k +sk+++l +e+ r W++ l++r + +++++++GW++F+++ngLk gD+ +Fkl+++s++++++++ +
  Thhalv10025105m 224 LPRKFVRPDGLNK-SSKKISLINEDARIWTLILKFRESTRTFYMRSGWRSFCRENGLKPGDSATFKLESNSTGRPLLSFSS 303
                      9*****9999997.789***************************************************9999999998765 PP

4B354.91.6e-17368467199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      f++  +++ ++k++r++lpk+f++++g++++++k +tl d +  +W v+l + k+s+r+ l++G  eF +a g+++  ++v++l+++ ++  +v
  Thhalv10025105m 368 FVTLNVTPGTFKHCRIYLPKSFTRNNGMENAQGKNVTLLDNHRVEWPVNLVMLKGSRRMHLGSGLIEFLRAIGVEAYKSFVLELVWEdKTSPPV 461
                      778889999******************9*********************************************************998999999 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      +k+++k
  Thhalv10025105m 462 LKFCSK 467
                      999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-267101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-229102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.87411103IPR003340B3 DNA binding domain
CDDcd100176.34E-181298No hitNo description
SMARTSM010192.0E-2514103IPR003340B3 DNA binding domain
PfamPF023627.3E-162095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-21118218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-20119218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.408125221IPR003340B3 DNA binding domain
CDDcd100173.83E-15125219No hitNo description
PfamPF023623.7E-19126219IPR003340B3 DNA binding domain
SMARTSM010191.3E-22126221IPR003340B3 DNA binding domain
CDDcd100174.31E-15210290No hitNo description
SMARTSM010192.5E-14222305IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-16223294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.283224305IPR003340B3 DNA binding domain
PfamPF023621.9E-16224302IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-14224294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-12360465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13364465IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-17368467IPR003340B3 DNA binding domain
PROSITE profilePS508639.784368467IPR003340B3 DNA binding domain
SMARTSM010191.0E-17368468IPR003340B3 DNA binding domain
CDDcd100177.54E-10379455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MANASLFSPA NPHFFQPLLS RFQSHLKIPV KFFSKHIEGK HEGKTVTLTS DSSKRTWKVK  60
MEGHRLTDGW KEFVKAHDLR IGDFVVFRHE GDMLFHVTAL GTGESSRKEN DLKRESDQSS  120
SDLTCFSQIV TASNLSRAVV GVPIDFARRN GLDKGRQKIV LMNKKGMSWK SEVKTSTAGQ  180
VFICRNWRSF CTANKLEVGD SFKFQLLQNT ETPVFQLCSL AEFLPRKFVR PDGLNKSSKK  240
ISLINEDARI WTLILKFRES TRTFYMRSGW RSFCRENGLK PGDSATFKLE SNSTGRPLLS  300
FSSSESKCVS KKHINKWKRI ETGESSQRVS PPSSSSSSSS SSSSSSSSSS SSSSSSSSSS  360
CSQSESRFVT LNVTPGTFKH CRIYLPKSFT RNNGMENAQG KNVTLLDNHR VEWPVNLVML  420
KGSRRMHLGS GLIEFLRAIG VEAYKSFVLE LVWEDKTSPP VLKFCSKVNI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025105m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004429.11e-153B3 domain-containing protein REM6
SwissprotO817821e-138REM6_ARATH; B3 domain-containing protein REM6
TrEMBLV4P3N90.0V4P3N9_EUTSA; Uncharacterized protein
STRINGXP_006412573.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-115B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]