PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025122m
Common NameEUTSA_v10025122mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 467aa    MW: 52028.5 Da    PI: 6.6055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025122mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12319365455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Thhalv10025122m 319 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 365
                      799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4349225IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17315381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-14318369No hitNo description
PfamPF000104.1E-10319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16319381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGLKFWENQE DRAMVESTIG SEACDFFISS ASSNTALTKL VAPPSDPNLQ QGLRHVVEGS  60
DWDYAVFWLA SNVNSSDGCV LVWGDGHCRV QKGNSGEDYS QQDESKRRVL RKLHSSFVGS  120
DEDHRLVKSG ALTDLDMFYL ASLYFSFRCD SNKYGPAGTY VSGKPLWASD LPSCLSYYRV  180
RSFLARSAGF KTVLSVPVNC GVVELGSLQL IPEDKSVIEM VKSVFGGSDF VQAKEAPKIF  240
GRQLSLGGSK PRSMSINFSP KMEDESGFSL ESYEVQAVGG SNQVYGYEQG KDEALYLTDE  300
QKPRKRGRKP ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY  360
ITDMQKKIRV YETEKQIMKR RESNQITPAE VDYQQRHDDA VVRLSCPLET HPVSKVIQTL  420
RENEVTPHDS NVAVTEEGVV HTFTLRPQGG CTAEQLKDKL LASLSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-26313375264Transcription factor MYC2
5gnj_B5e-26313375264Transcription factor MYC2
5gnj_E5e-26313375264Transcription factor MYC2
5gnj_F5e-26313375264Transcription factor MYC2
5gnj_G5e-26313375264Transcription factor MYC2
5gnj_I5e-26313375264Transcription factor MYC2
5gnj_M5e-26313375264Transcription factor MYC2
5gnj_N5e-26313375264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025122m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004378.10.0transcription factor bHLH3 isoform X1
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLV4MRH90.0V4MRH9_EUTSA; Uncharacterized protein
STRINGXP_006414350.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]