PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025260m

Common Name

EUTSA_v10025260mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 432aa MW: 47560.1 Da PI: 9.8349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025260m	genome	JGI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	198	219	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.44E-24	221	430	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.9E-11	224	427	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEASRTRSEK KKLERENSNS QKNKKLPSVW FSLKKSLYCK SDPSDVHDPR SRKELATIST 60 KSTTYRSGCS RSIANLKDVI HGSNRHLEKP PCSSPRSIGS SEFLNPITHE VILSNSTSEL 120 KITGAGDISS PTGAREFLGT LRPGTPLNYS CSYRSHTSRK ASLAVLERDR EGLVIHPSRR 180 ASLERDSAIN GGSSSVSCHK CGEKFSKLEA AEAHHLTKHA VTELVDGDSS RKIVEIICRT 240 SWSKSENQGE RIDRILKVHN MHKTLARFEE YRDTVKSRAS KLQKKHPRCI ADGNELLRFH 300 GTTVACVLGV NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS GRAFESIAIA 360 GDEGKTERKA LIVCRVIAGR VHRPVENVEE TGWLNGFDSL AGKVGLYTNV EELYLLNSRA 420 LLPCFVVICK P*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEASRTRSEK KKLERENSNS QKNKKLPSVW FSLKKSLYCK SDPSDVHDPR SRKELATIST  60
KSTTYRSGCS RSIANLKDVI HGSNRHLEKP PCSSPRSIGS SEFLNPITHE VILSNSTSEL  120
KITGAGDISS PTGAREFLGT LRPGTPLNYS CSYRSHTSRK ASLAVLERDR EGLVIHPSRR  180
ASLERDSAIN GGSSSVSCHK CGEKFSKLEA AEAHHLTKHA VTELVDGDSS RKIVEIICRT  240
SWSKSENQGE RIDRILKVHN MHKTLARFEE YRDTVKSRAS KLQKKHPRCI ADGNELLRFH  300
GTTVACVLGV NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS GRAFESIAIA  360
GDEGKTERKA LIVCRVIAGR VHRPVENVEE TGWLNGFDSL AGKVGLYTNV EELYLLNSRA  420
LLPCFVVICK P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025260m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413099.1	0.0	uncharacterized protein LOC18030024 isoform X2
TrEMBL	V4MH05	0.0	V4MH05_EUTSA; Uncharacterized protein
STRING	XP_006413099.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3553	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025260m
Entrez Gene	18030024