PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025276m

Common Name

EUTSA_v10025276mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Trihelix

Protein Properties

Length: 428aa MW: 47380.7 Da PI: 8.7108

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025276m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.7	9.6e-21	34	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++ +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ Thhalv10025276m 34 CWTDDETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsllpTLGGPPKSAIQCRHKIEKLRKRYRGEKQRSLSRPGKFSSSWDLFPVLD 123 8***********************************999999999************************9999*****9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.6E-21	33	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MSTPDDGSPV AMAIDPSTAV TVATTTTRRV PPPCWTDDET AALVNAYKDK WFALRRGNLR 60 AADWDDVAAA VSLLPTLGGP PKSAIQCRHK IEKLRKRYRG EKQRSLSRPG KFSSSWDLFP 120 VLDAMGFAPV TPAAVEPYDR DVDHDDESNG LDGFRVRSKR SGKFSGYSDS PREVGDGYGV 180 RSRARSHMKM YGGFKPEFDS DHDSGSGFGL KRKFNGNSKV TAADFDGHSD NEIVLVPKAR 240 LKPHGKPSSG EFSHGGGGFP LKSFGDRNFA SHGFNKHKSF GKPEANFSPE LDYDDEFDDE 300 RDGFNTRMQN SRSSSRVNGY SRKDGSYPRN TSNGYGSSSR FKHGQMNAAD VESDPIDEVV 360 SSVKMLTEMF VRVENSKMEM MREMEKTRME MELKHCQMML ESQQQIIGAF ADALSEKKST 420 NARKPVS*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MSTPDDGSPV AMAIDPSTAV TVATTTTRRV PPPCWTDDET AALVNAYKDK WFALRRGNLR  60
AADWDDVAAA VSLLPTLGGP PKSAIQCRHK IEKLRKRYRG EKQRSLSRPG KFSSSWDLFP  120
VLDAMGFAPV TPAAVEPYDR DVDHDDESNG LDGFRVRSKR SGKFSGYSDS PREVGDGYGV  180
RSRARSHMKM YGGFKPEFDS DHDSGSGFGL KRKFNGNSKV TAADFDGHSD NEIVLVPKAR  240
LKPHGKPSSG EFSHGGGGFP LKSFGDRNFA SHGFNKHKSF GKPEANFSPE LDYDDEFDDE  300
RDGFNTRMQN SRSSSRVNGY SRKDGSYPRN TSNGYGSSSR FKHGQMNAAD VESDPIDEVV  360
SSVKMLTEMF VRVENSKMEM MREMEKTRME MELKHCQMML ESQQQIIGAF ADALSEKKST  420
NARKPVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025276m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118245	0.0	AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414277.1	0.0	trihelix transcription factor ASIL2
Swissprot	O23550	1e-164	FRIP2_ARATH; Protein FIP2
TrEMBL	V4LYH9	0.0	V4LYH9_EUTSA; Uncharacterized protein
STRING	XP_006414277.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-20	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025276m
Entrez Gene	18030685

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]