PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025359m
Common NameEUTSA_v10025359mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 405aa    MW: 44332.2 Da    PI: 6.6538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025359mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000542653001555
                      HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  Thhalv10025359m 265 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 300
                      5556788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-10260314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-5260304No hitNo description
Gene3DG3DSA:4.10.280.104.9E-7265307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNRGVLESSP VQQLMTAGNP NWWNVSGGMR PPPPLIGHQQ GPLPPQMTPN NNYLRPRMMP  60
TLLPHFLPSP ATSSSSSSSP SVPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL  120
EMMNHHNHHD EQHHHHSFQG KMRLENWEEQ VLSPQQISMG VVEIKQENNV NNNNGYLISS  180
PNSPPNKSCV TTTTTTSLNS NDENNNNMLD FSSNHNGLNL SEGRHTPPDR TSECNSLEIG  240
GSTNKKPRLQ PSPSSQSTLK VRKEKLGGRI AALHQLVSPF GKTDTASVLS EAIGYIRFLQ  300
SQIEALSHPY FGTNASGNMR HQQHFQGDGS CIFPEDPGQL VNDQCMKRRG ASSSSTDNQN  360
ANEEPKKDLR SRGLCLVPVS CTLQVGSDNG ADYWAPALGS AGFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025359m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526290.0AK352629.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-N24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412879.10.0transcription factor bHLH68
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLE4MVT20.0E4MVT2_EUTHA; mRNA, clone: RTFL01-04-N24
TrEMBLV4MGB60.0V4MGB6_EUTSA; Uncharacterized protein
STRINGXP_006412879.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]