PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025587m
Common NameEUTSA_v10025587mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 353aa    MW: 39772.5 Da    PI: 9.9147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025587mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18193243256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r++lg+f t e+Aa a++ a+  l+ge
  Thhalv10025587m 193 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETDEQAAMAYDTAAYILRGE 243
                      59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-30192252No hitNo description
PROSITE profilePS5103222.655193250IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22193251IPR016177DNA-binding domain
SMARTSM003805.1E-34193256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31193251IPR001471AP2/ERF domain
PRINTSPR003671.9E-10194205IPR001471AP2/ERF domain
PfamPF008471.1E-12194243IPR001471AP2/ERF domain
PRINTSPR003671.9E-10216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MITPIHTQTH NQFLKMGTSF THEMLLSSGF YGILSSSAPP QFLGVPIILE GMKSPFPSSS  60
SPTCFVSSQE LTSSSFQQSM VASVPWNFLE SFPLSQRPDH HLSKPPNLTL FLKEPKLSQS  120
NSNMIPYHNY LPNSFHQSDQ NRNEWAEINK TLTSYPSKGF GNYWLRTTKT QAMKLASGSK  180
TRKVVQTTTP TKLYRGVRQR HWGKWVAEIR LPRNRTRVWL GTFETDEQAA MAYDTAAYIL  240
RGEYAHLNFP DLKHQLKSGS LRLMIASLLE SKIQQISSSQ VIGSFNSPPP CPPKVETSKP  300
NNHIEMESGE VVMMKKHKLQ KEVMEGDGVQ LSRMPSLDMD LIWDALSIPH SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20192250160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20192250463ATERF1
3gcc_A3e-20192250463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025587m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005857.10.0ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLV4P9H70.0V4P9H7_EUTSA; Uncharacterized protein
STRINGXP_006414873.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-170ERF family protein