PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025606m
Common NameEUTSA_v10025606mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 351aa    MW: 40073.6 Da    PI: 5.4935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025606mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.2e-50101521129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                      lppGfrFhP+deelv++yL++k+++k+    +   e             + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat
  Thhalv10025606m  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdV---EdddvnealnggtDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRAT 100
                      79**********************99966541...145667778888569**************87788999********************** PP

              NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Thhalv10025606m 101 ISGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                      ****************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-568170IPR003441NAC domain
PROSITE profilePS5100553.62510170IPR003441NAC domain
PfamPF023651.4E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDDVNEAL NGGTDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSSLQDNN  180
NNIDHQVQRV EINDPPDLNC APNYNNYLQP LLSSPPSTTI DPPHDHQYDE WEQLMKQPSR  240
TTDHPYHHHC QHQTIPRGWE QMMIGSMSSS SSHGPDHESL LNLLYADNNN STVTITDNQN  300
YEKILLSSEI TSLDHDKTCM GSSSDGGMVS DLHMECGGLS FETENLLAFH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-441017017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-441017017165NO APICAL MERISTEM PROTEIN
4dul_A2e-441017017165NAC domain-containing protein 19
4dul_B2e-441017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025606m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412943.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLV4P4I70.0V4P4I7_EUTSA; Uncharacterized protein
STRINGXP_006412943.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74