PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025775m
Common NameEUTSA_v10025775mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family BES1
Protein Properties Length: 314aa    MW: 33831.6 Da    PI: 8.6256
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025775mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822219.19.8e-6881482145
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                      +sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+ ++e+ g+ ++ s++ss+q
  Thhalv10025775m   8 SSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPP-ASEISGTPTNLSTNSSIQ 100
                      89*************************************************************************.****************** PP

           DUF822  96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                       s++ssa++sp++sy+ sp sssfpsps+ d ++++    llp+l++ ++
  Thhalv10025775m 101 PSPQSSAFPSPAPSYHGSPVSSSFPSPSRHDGNPSS--YLLLPFLQNIAS 148
                      *********************************887..899999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.1E-628132IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAAGGGSSSG RTPTWKEREN NKKRERRRRA ITAKIYSGLR AQGNYKLPKH CDNNEVLKAL  60
CLEAGWIVED DGTTYRKGFK PPASEISGTP TNLSTNSSIQ PSPQSSAFPS PAPSYHGSPV  120
SSSFPSPSRH DGNPSSYLLL PFLQNIASSI PANLPPLRIS NSAPVTPPLS SPTSRGSKRK  180
LTSEQLPNGG SLHALRHPLF AISAPSSPTR RGGHQTPPTI PECDESEEDS IEDSGRWINF  240
QSTAPTSPTF NLVHQTSMAI DMKRSDWGLS GLNGRGSEFE FENGTVKPWE GEMIHEVGVE  300
DLELTLGGTK TRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-271189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-271189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-271189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-271189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025775m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411962.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A430.0BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLV4LS330.0V4LS33_EUTSA; Uncharacterized protein
STRINGXP_006411962.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.11e-94BES1/BZR1 homolog 2