PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025787m
Common NameEUTSA_v10025787mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 311aa    MW: 34949.2 Da    PI: 4.7291
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.72.7e-121998281
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
                     Wt +  l L++    +e + +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  +y +ik++e++++ + +s +++
  Thhalv10025787m 19 WTVKDCLILVNEIAAVEADCSNALSSFQKWTIISENCNALDVHRTLNQCRRKWDSLVSDYNQIKKWESQGRGGGHSYWSL 98
                     99999999999999*******************************************************99888888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-101889No hitNo description
PROSITE profilePS500906.3881975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDEGTSGSRR TRSQVAPDWT VKDCLILVNE IAAVEADCSN ALSSFQKWTI ISENCNALDV  60
HRTLNQCRRK WDSLVSDYNQ IKKWESQGRG GGHSYWSLST EKRKKLNLPG NIDNELFEAI  120
NAVVMLQEDK AGTEPDSDPE AQEGYDVLDV SAELAFVGSK RSRQRTLLVM KENPPHKTKT  180
DAEPRRNRVL DKTKEQRAKA TNQKKPMEEK KPVEEISTGE GEEDTMSIEE EETMNIEKEV  240
EAMEAKLGEK ADLIHAIVGR NLAKGSETGD DISISDKMKF VRQQGEELIV CLSEIVNTLN  300
KLREVPQEIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025787m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412613.10.0trihelix transcription factor ASR3
RefseqXP_024005449.10.0trihelix transcription factor ASR3
RefseqXP_024005450.10.0trihelix transcription factor ASR3
RefseqXP_024005452.10.0trihelix transcription factor ASR3
RefseqXP_024005453.10.0trihelix transcription factor ASR3
TrEMBLV4P3R90.0V4P3R9_EUTSA; Uncharacterized protein
STRINGXP_006412613.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-139sequence-specific DNA binding transcription factors