PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025912m
Common NameEUTSA_v10025912mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 288aa    MW: 31364 Da    PI: 8.6428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025912mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001164186123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F ++  L  H  tH
  Thhalv10025912m 164 FECGGCKKVFGSHQALGGHRATH 186
                      89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0567799IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-877101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74377104IPR007087Zinc finger, C2H2
SuperFamilySSF576675.82E-97899No hitNo description
Gene3DG3DSA:3.30.160.606.2E-47999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576675.82E-9159186No hitNo description
PfamPF139121.6E-7163187IPR007087Zinc finger, C2H2
SMARTSM003552.4164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889164191IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-5224251No hitNo description
PfamPF139125.4E-11224249IPR007087Zinc finger, C2H2
SMARTSM003550.11225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTTNNSDSDP NLHNQLPPTS NAIVPSLPNP NLQLAFSPSY DQSPRKKRTK TVASSSTSSP  60
KPKYTKRPDP NAPKITRPCT ECGKKFWSLK ALFGHMRCHP ERQWRGINPP PNHRGSAAAS  120
SSKQLNQRSP NWLSSMSEED HLVASCLLML SDATPSSSTS HDRFECGGCK KVFGSHQALG  180
GHRATHKNVK GCFAITNVTD DPMTVTSTSN DQDHHGKIVT FSGHHKCNIC FRVFSSGQAL  240
GGHMRCHWER EEETTIGGAF DLNVPATIED PSTSDTSGCS LDLSLRL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025912m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412124.10.0zinc finger protein ZAT3
SwissprotO654991e-148ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLV4MEC60.0V4MEC6_EUTSA; Uncharacterized protein
STRINGXP_006412124.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-139C2H2-like zinc finger protein