PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025989m
Common NameEUTSA_v10025989mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 267aa    MW: 29461.8 Da    PI: 6.04
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025989mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.8e-20101161257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + + +ps++++++++++l     + e++V++WFqNrRa+ k+
  Thhalv10025989m 101 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELiqhgPIAEQNVYNWFQNRRARSKR 161
                      89*****************99*******************99*****************97 PP
2Wus_type_Homeobox98.84.1e-32100163265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL ++G i ++NV++WFQNr+aR+++kq
    Thhalv10025989m 100 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELIQHGPIAEQNVYNWFQNRRARSKRKQ 163
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-1696164IPR009057Homeodomain-like
PROSITE profilePS5007114.46397162IPR001356Homeobox domain
SuperFamilySSF466891.58E-1597163IPR009057Homeodomain-like
SMARTSM003892.0E-1299166IPR001356Homeobox domain
PfamPF000461.0E-17101161IPR001356Homeobox domain
CDDcd000864.57E-11101163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMEWDNQQQP NNHHSSNLQG IDVNGGSGAV VGGGGGMYVK VMTDEQLETL RKQIAIYATI  60
CERLVEMHKT LTAQQDLAGG RLGGLYVDPM MSSIGHKMTA RQRWTPTPVQ LQILERIFDQ  120
GTGTPSKQKI KDITEELIQH GPIAEQNVYN WFQNRRARSK RKQHGGGSSS NNNGESETET  180
ESLNEKRKRP EGLPVLPDGN NSNNAIGTTT TSPRPEDLCF QSPEMSSDLH LLGVLSNPRD  240
EHLVGKMGLS ESYNLYDHVE EYGMSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025989m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482680.0AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBankAY2514040.0AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBankBT0005380.0BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412091.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-151WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLV4MB090.0V4MB09_EUTSA; Uncharacterized protein
STRINGXP_006412091.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-128WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]