PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026022m
Common NameEUTSA_v10026022mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 260aa    MW: 29763 Da    PI: 7.3067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026022mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  ++  +G  +W++++ + g+ R +k+c++rw +yl
  Thhalv10026022m 16 KGFWSPEEDEKLRSYILSHGHSCWTAVPIKAGLQRNGKSCRLRWINYL 63
                     688*******************************************97 PP
2Myb_DNA-binding46.96.4e-1573114548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T+eE+e+++  +  lG++ W++Ia++++ gRt++++k++w+++l
  Thhalv10026022m  73 TAEEEEIILTFHSSLGSK-WSRIAKYLP-GRTDNEIKNYWHSHL 114
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0121163IPR017930Myb domain
SuperFamilySSF466891.43E-2713110IPR009057Homeodomain-like
SMARTSM007173.6E-101565IPR001005SANT/Myb domain
PfamPF002493.1E-121763IPR001005SANT/Myb domain
CDDcd001678.16E-81963No hitNo description
Gene3DG3DSA:1.10.10.602.8E-211970IPR009057Homeodomain-like
PROSITE profilePS5129421.53364118IPR017930Myb domain
SMARTSM007179.2E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2371117IPR009057Homeodomain-like
CDDcd001675.52E-1073114No hitNo description
PfamPF002492.4E-1373114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAKMKSGERL NQRQRKGFWS PEEDEKLRSY ILSHGHSCWT AVPIKAGLQR NGKSCRLRWI  60
NYLKPGLKRE MITAEEEEII LTFHSSLGSK WSRIAKYLPG RTDNEIKNYW HSHLKKRWLK  120
SQSSQHTTSI SSSSSESPVA CGKRNPESMV SDHVISFQRL PENKSSSSSE ESNSNISYPC  180
SSGLEIPRLF FSEWFPSSDP HIDYSSDLTD SKHSQAPNNE RSVSDYEEVD DGDQFHYNEM  240
LMNDSNWTLN DVVFGSKCQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23161177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026022m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196090.0AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413295.10.0transcription factor LAF1
SwissprotQ9M0K41e-140LAF1_ARATH; Transcription factor LAF1
TrEMBLV4MP290.0V4MP29_EUTSA; Uncharacterized protein
STRINGXP_006413295.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-129myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]