PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026068m
Common NameEUTSA_v10026068mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 251aa    MW: 26793.5 Da    PI: 4.1924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026068mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05145166223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C++Cg+ F+++     H+r H
  Thhalv10026068m 145 QCNICGRNFTSWKAVFGHLRAH 166
                      7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.767144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSNPEKTKMV TEEEINEISE DSGYLSSGEE GEIRELVCAL PALNVTERLN MEEAGLHNAV  60
VAAEFVMVAS EEAPVSKENM QTVDAIDDDA KNTALGRRPR IDELDDAAGA SGSTAIGSGG  120
EDEPVKKAKK KGSSQLHAPP QGPPQCNICG RNFTSWKAVF GHLRAHKDRG YQGFLPPPTF  180
NATEEGFSAV VLASDSSRGG VLGFGSSGID LNLDPMEEEE EAVSGFIPKF DLNRSPPQEG  240
QEEEEEDKAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026068m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412072.21e-177uncharacterized protein LOC18028260
TrEMBLV4LSH00.0V4LSH0_EUTSA; Uncharacterized protein
STRINGXP_006412072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-64C2H2 family protein