PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026110m
Common NameEUTSA_v10026110mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 242aa    MW: 27040.2 Da    PI: 7.2894
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026110mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.4e-18169203135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Thhalv10026110m 169 CSHCGVQKTPQWRIGPLGAKTLCNACGVRFKSGRL 203
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.3E-871239IPR016679Transcription factor, GATA, plant
SuperFamilySSF577168.55E-14161225No hitNo description
PROSITE profilePS5011411.319163199IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-13163217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-14167201IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-16169203IPR000679Zinc finger, GATA-type
CDDcd002021.75E-13169216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MECVEAFLGD FSVDDLLDFS NADAFEREES SSSQREEDEQ KREKAKRFSE QNTCLSPLED  60
LLSFPGSKLD VPVGDLEDLE WLSNFVEDSL PESCFSSDIP VNPAASVEVK KQSVPVKPRS  120
KRRRTYGHNW SLESPYSSQS FAGKKERGRQ KSETSSGVGA QQQQPRRCCS HCGVQKTPQW  180
RIGPLGAKTL CNACGVRFKS GRLLPEYRPA CSPTFSTEFH SNSHRKVLEL RLMKTADPGR  240
V*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026110m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412016.11e-178GATA transcription factor 7
SwissprotO655151e-128GATA7_ARATH; GATA transcription factor 7
TrEMBLV4MAP81e-177V4MAP8_EUTSA; GATA transcription factor
STRINGXP_006412016.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-119GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]