PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026133m
Common NameEUTSA_v10026133mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family DBB
Protein Properties Length: 236aa    MW: 26125.8 Da    PI: 5.9773
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06533634
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                     C+ ++++e++ fC  ++  lC+ C  + H
  Thhalv10026133m  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
                     *************************9988 PP
2zf-B_box30.57.4e-105592338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     ++ C+ + e ++ lfC++++  lC++C  ++H+   Ht
  Thhalv10026133m 55 APLCDICAERRALLFCQEDRAILCRECDISIHQAneHT 92
                     789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000215.01E-6533No hitNo description
SMARTSM003365.8E-1553100IPR000315B-box-type zinc finger
SuperFamilySSF578455.49E-55391No hitNo description
PROSITE profilePS5011910.40953100IPR000315B-box-type zinc finger
PfamPF006434.0E-85593IPR000315B-box-type zinc finger
CDDcd000211.06E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CAERRALLFC QEDRAILCRE CDISIHQANE HTKKHNRFLL TGVKISALPS AYPRASNPNS  120
TAGSGRAKTR PKSVSEEVPS SASSDIFASS PSTNTSNYYY GLEENYHQVS DSGSGSGTGS  180
ISEYLMETLP GWRVEDLLEH PSCVSYEDNN NESYRAYDGS SQYHHQGFWE QKPFS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026133m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303790.0AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.
GenBankBT0288930.0BT028893.1 Arabidopsis thaliana unknown protein (At4g39070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411703.11e-177B-box zinc finger protein 20
SwissprotQ0IGM71e-140BBX20_ARATH; B-box zinc finger protein 20
TrEMBLV4P1H11e-176V4P1H1_EUTSA; Uncharacterized protein
STRINGXP_006411703.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-126DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]