PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026163m
Common NameEUTSA_v10026163mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 228aa    MW: 24627.5 Da    PI: 8.6732
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026163mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1071.1e-3349103358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e
  Thhalv10026163m  49 KIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 103
                      689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2650103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-3050102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2951101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41852101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-31151226IPR009057Homeodomain-like
SuperFamilySSF466895.24E-19152225IPR009057Homeodomain-like
TIGRFAMsTIGR015656.9E-27165221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNFEDQEEER EMSGVNPPGG YESLSGEGAT SSGGGGGGGG RRKTVGGGKI RYRECLKNHA  60
VNIGGHAVDG CCEFMPSGED GSLDALKCAA CGCHRNFHRK ETEIIGGRAH RVPTYYNRPP  120
QLPPPPGYLH LTSPATAGQP YRPPAASADQ EDTSNPSSSG GTTAKRFRTK FTAEQKEKML  180
IFAERLGWRI QKHDDVAVEQ FCAETGVRRQ VLKIWMHNNK NSLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-371632221675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026163m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532610.0AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413402.11e-170zinc-finger homeodomain protein 2
SwissprotQ9SB611e-123ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLE4MXL41e-169E4MXL4_EUTHA; mRNA, clone: RTFL01-39-I06
TrEMBLV4LVY81e-169V4LVY8_EUTSA; Uncharacterized protein
STRINGXP_006413402.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-107homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]