PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026166m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 228aa    MW: 25725.7 Da    PI: 10.0739
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026166mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.8e-3275128255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Thhalv10026166m  75 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 128
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1572129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2873129IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2375129IPR006447Myb domain, plants
PfamPF002495.5E-776127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRPILMTRPI RGTPLYQNQI LDHYYYSPTP PFFFSEVNGQ HANPNFTSNH LHHRHRRQAQ  60
PPPQRFTAKR GVRAPRMRWT TTLHAHFVHA VQLLGGHERA TPKSVLELMD VQDLTLAHVK  120
SHLQMYRTIK STEKPTTSSG QSDTCENGSQ SNSERQARGL WNNSSSEARF HLKAKASALD  180
ISSNENVDQR CPSYERLSSD SSSLTGTRPE TETPNLDFTL ATPNLPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026166m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534550.0AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005509.11e-170probable transcription factor KAN3
SwissprotQ941I21e-134KAN3_ARATH; Probable transcription factor KAN3
TrEMBLE4MY581e-168E4MY58_EUTHA; mRNA, clone: RTFL01-31-C13
STRINGXP_006414198.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-120G2-like family protein