PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026242m
Common NameEUTSA_v10026242mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 211aa    MW: 24502 Da    PI: 9.4956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026242mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-12121162351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Thhalv10026242m 121 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 162
                      79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.361103175IPR001471AP2/ERF domain
SMARTSM003803.6E-7120177IPR001471AP2/ERF domain
PfamPF008471.6E-6120163IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9121165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-9122167IPR001471AP2/ERF domain
CDDcd000182.04E-12122173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPKPNP ELSEMVKHEE KTLIEEGSGS  60
LSERTRSKSM HFKSDFSDIS PDDSGSISPK WEQNTCSADQ PLKRRKRHRR KEVQNQEPCL  120
MRGVYYKNMK WQAAIKVEKR QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEDKHEL  180
KRQSWEEFLA CTRRTITNKK PKRRIDELLN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRKRHRRKE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026242m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336901e-96AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414971.21e-156ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_024005895.11e-156ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_024005896.11e-156ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_024005899.11e-157ethylene-responsive transcription factor-like protein At4g13040 isoform X4
RefseqXP_024005900.11e-157ethylene-responsive transcription factor-like protein At4g13040 isoform X4
SwissprotQ56XP91e-88ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLV4MIH21e-155V4MIH2_EUTSA; Uncharacterized protein
STRINGXP_006414971.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.15e-77ERF family protein