PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026268m
Common NameEUTSA_v10026268mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 205aa    MW: 22287.6 Da    PI: 4.8565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026268mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-054769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Thhalv10026268m 47 YTCNFCRREFRSAQALGGHMNVH 69
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-64473No hitNo description
Gene3DG3DSA:3.30.160.609.1E-44571IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNGGAWMWNP NKVEELMEDD DESWEVKAFE QDTKGNISGT TWPPRSYTCN FCRREFRSAQ  60
ALGGHMNVHR RDRASSRAHQ SHTAAARGGG TVGGTTLLNS CVPPTTTLII QSTATNIEGL  120
SHFYQLQNPN GMFGNSSDMV NFYGATSIPS SNLAFSVLNS PVEVPPRLIE YSTGDDESIG  180
SMKETTGASV DEPDLELRLG HYPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134269229superman protein
2l1o_A2e-134269229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026268m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531320.0AK353132.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414184.11e-153probable transcriptional regulator RABBIT EARS
TrEMBLV4MJP31e-152V4MJP3_EUTSA; Uncharacterized protein
STRINGXP_006414184.11e-152(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-124C2H2 family protein