PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026322m
Common NameEUTSA_v10026322mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 191aa    MW: 21707.7 Da    PI: 9.5621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026322mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.1e-111663555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + +E++RR +++  ++eL +llP+    + + l+  + L +A  YIk+Lq
  Thhalv10026322m 16 RKTIEKNRRIQMKALYSELNSLLPQT---SREPLTLPDQLDEAASYIKKLQ 63
                     5789*********************9...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.23E-4967No hitNo description
PROSITE profilePS5088811.2551162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-81576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.81E-91678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-41768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDQSHSNTSQ SRSADRKTIE KNRRIQMKAL YSELNSLLPQ TSREPLTLPD QLDEAASYIK  60
KLQVNVEKKR ERKRKLLATA AFDKLNSSGS SSMSSSVDIS VPRRLPKIEI QETGSILHIF  120
LVTSLEHKFM FYHEIIRVLT EELGTEISHA GYSIVDDAVF HTIHSKVEDC DYGARSRIYE  180
RLKKLVNSVN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026322m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413836.11e-138transcription factor bHLH162
SwissprotF4JIJ78e-97BH162_ARATH; Transcription factor bHLH162
TrEMBLV4MFL31e-136V4MFL3_EUTSA; Uncharacterized protein
STRINGXP_006413836.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-91bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]