PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026341m
Common NameEUTSA_v10026341mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 185aa    MW: 21065.2 Da    PI: 9.5127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026341mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-152675455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ L +Av+YIk+Lq
  Thhalv10026341m 26 VHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYIKYLQ 75
                     69************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.8462274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-102479No hitNo description
SuperFamilySSF474593.01E-142489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-122688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-122675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-72880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNDFPQKRRC NKKLRNSSEE NMDKIVHREV EKQRRQEMAS LYASLRSLLP LEFIQGKRST  60
SDQLNEAVNY IKYLQTNIKD MSSKRNNLML LPGRSFGSSN GGDRNEISNQ AVIRPCLVGL  120
EIVFSVIQTP LSRVLQLFRE HGLCVLSSIS STVNDRLIYT VHAEVNDLAL IDFADLKDTL  180
TFMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026341m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413310.11e-134transcription factor bHLH118
SwissprotQ9STJ77e-85BH118_ARATH; Transcription factor bHLH118
TrEMBLV4MP381e-132V4MP38_EUTSA; Uncharacterized protein
STRINGXP_006413310.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.13e-87bHLH family protein