PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10026348m

Common Name

EUTSA_v10026348mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

DBB

Protein Properties

Length: 184aa MW: 20033.5 Da PI: 5.5915

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10026348m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.3e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC++C ++ H Thhalv10026348m 4 LCDACENAAAIVFCAADEAALCRSCDEKVH 33 6*****9****************998 PP
2	zf-B_box	26.7	1.2e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++++C+ +e+ ++ ++Ce +++ lC +C + H g H Thhalv10026348m 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.395	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.05E-6	3	45	No hit	No description
Pfam	PF00643	6.0E-6	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-7	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.916	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	2.2E-12	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.42E-7	56	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRILCDACEN AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NNTRDNLQNQ 120 RVSANANGEA NGKTDDEMID LNANPQRIHE PASNNQDIDV NNASNHEPAG VVPVGPFKRE 180 SEK*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10026348m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352890	0.0	AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411690.1	1e-133	B-box zinc finger protein 19 isoform X1
Refseq	XP_024005456.1	1e-133	B-box zinc finger protein 19 isoform X1
Swissprot	C0SVM5	1e-125	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	V4MKE7	1e-132	V4MKE7_EUTSA; Uncharacterized protein
STRING	XP_006411690.1	1e-132	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-128	DBB family protein

Link Out ? help Back to Top
Phytozome	Thhalv10026348m
Entrez Gene	18028342