PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026412m
Common NameEUTSA_v10026412mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LSD
Protein Properties Length: 170aa    MW: 18372.7 Da    PI: 4.8461
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026412mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.87.7e-1381105125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lLsYP G ++V+C++C+tV
  Thhalv10026412m  81 CGSCRRLLSYPKGTKHVKCSCCQTV 105
                      ************************9 PP
2zf-LSD145.61.2e-14119143125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C++C+ lL+YP+GApsVRC++C+ V
  Thhalv10026412m 119 CSNCKLLLMYPYGAPSVRCSSCNSV 143
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1778108IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1081105IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-11116144IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-12119143IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MITGAETEGV MEEIQTQKKE EQNHGEKVEE EEEEEGPPPG WESAVLPPPQ PTSPPPTTTV  60
SAAVNPTPTT AEIPETAQMV CGSCRRLLSY PKGTKHVKCS CCQTVNLVLE ANQVGQVSCS  120
NCKLLLMYPY GAPSVRCSSC NSVTDIRENN KRPPWSVQQG PLKTFSSVR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026412m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117601e-117BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBankBT0123841e-117BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413754.11e-120protein LOL2 isoform X2
SwissprotO654264e-74LOL2_ARATH; Protein LOL2
TrEMBLV4MIM71e-118V4MIM7_EUTSA; Uncharacterized protein
STRINGXP_006413754.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-56lsd one like 2