PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026815m
Common NameEUTSA_v10026815mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 253aa    MW: 28521.6 Da    PI: 8.9945
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026815mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.31.3e-362277661
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     + cprC+s+ntkfCyynnyslsqPry Ck+CrryWt+GGalrn+P+Gg+ rk k++
  Thhalv10026815m 22 RVCPRCNSDNTKFCYYNNYSLSQPRYICKNCRRYWTHGGALRNIPIGGSGRKTKRQ 77
                     68**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-231676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1182276IPR003851Zinc finger, Dof-type
PfamPF027013.5E-322376IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDNSNVFVRG ANQVNEEKPL PRVCPRCNSD NTKFCYYNNY SLSQPRYICK NCRRYWTHGG  60
ALRNIPIGGS GRKTKRQKID QPSLSQMVSV EIQQINHHQP FLHVQETNEF VGSFGGSSSV  120
VAVGNHFGSF SEIHGDMVLP IRTIRPLMDR LDFSDGSFNQ DYFDVGSNDL GNSFINQPIG  180
RHVDSYSGYR MNQEDQNKQN QSFNNTLNMN HNTSTNESRG SSGIDHMNKN NNNKVIKKCV  240
FRSSSSLEKN GP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026815m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413832.10.0dof zinc finger protein DOF4.4
SwissprotQ9SUA96e-78DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LX810.0V4LX81_EUTSA; Uncharacterized protein
STRINGXP_006413832.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.18e-72Dof-type zinc finger domain-containing protein