PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026904m
Common NameEUTSA_v10026904mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 118aa    MW: 13109 Da    PI: 5.7444
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026904mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-3151071101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                      +C+aCkvl+  C+ +Cv++pyfp+++p+ f  vh++FGa+nv k+l++   ++ +re+a+++l yeAear+rdPv G + + l++++ l++lk+
  Thhalv10026904m   5 PCSACKVLKSVCTGECVFSPYFPSTEPEIFDRVHRIFGAENVYKILSNEtfSPLQREHAVKALSYEAEARIRDPVTGYYDMSLAYEKILNNLKE 98 
                      7*********************************************876569999*************************************** PP

           DUF260  93 elallkeel 101
                      +++++k+e+
  Thhalv10026904m  99 QIVSAKNEI 107
                      ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6784107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-295104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFSPYFPSTE PEIFDRVHRI FGAENVYKIL SNETFSPLQR  60
EHAVKALSYE AEARIRDPVT GYYDMSLAYE KILNNLKEQI VSAKNEIVAT MGPDKVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2721088112LOB family transfactor Ramosa2.1
5ly0_B2e-2721088112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026904m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413633.23e-82LOB domain-containing protein 35
SwissprotQ9FFL35e-37LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4P6C51e-81V4P6C5_EUTSA; Uncharacterized protein
STRINGXP_006413633.12e-82(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-39LOB domain-containing protein 35