PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10026981m

Common Name

EUTSA_v10026981mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HSF

Protein Properties

Length: 94aa MW: 10996.8 Da PI: 10.6247

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10026981m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	24.9	5.1e-08	10	87	13	88
GGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESX.XXX CS HSF_DNA-bind 13 eelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhks.Fkk 88 + +++isws+++++ +v+++ ef++k++++ nf+ F +L+ Y F k ++ + + + + eF hk+ F++ Thhalv10026981m 10 LSSESIISWSKSNKNSIVWNQGEFHRKIISRAILCLNFSRFFSKLKEYvTFWICKIKRFVKIKGSMQSEFGHKEyFER 87 56789***999*******************************6799999999998888999***996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	0.005	4	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.17E-7	9	85	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.9E-9	10	88	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.5E-7	11	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MGVQVSADDL SSESIISWSK SNKNSIVWNQ GEFHRKIISR AILCLNFSRF FSKLKEYVTF 60 WICKIKRFVK IKGSMQSEFG HKEYFERIKR SIP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10026981m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413834.1	3e-17	heat stress transcription factor A-4a
TrEMBL	V4MJ23	2e-60	V4MJ23_EUTSA; Uncharacterized protein
STRING	XP_006413944.1	4e-61	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Link Out ? help Back to Top
Phytozome	Thhalv10026981m
Entrez Gene	18029560