PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027016m
Common NameEUTSA_v10027016mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 364aa    MW: 40123.8 Da    PI: 4.891
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027016mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.59.9e-29151243198
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r K++f +  k+    +  ++ ++ dqk+fels+k
  Thhalv10027016m 151 KMFQRLFSETDEIAMLQGFLDFTSTRG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKRRFVNIGKT----EIGVMLQDLDQKAFELSRK 239
                      58*************************.9*************************************99999....6678899************ PP

           DUF573  95 iWgs 98 
                      iWg+
  Thhalv10027016m 240 IWGT 243
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-23153242IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAPKQAEKIE KPPVASSSEE EEEESGSSGE ESESSDDEGD VQSKISQTTP ATITAKDFES  60
DSEEGESESD SDSEPTTTKT KPLNTVVTKP KPETSGSAAV TLPESSTAKR SLKQADDEPI  120
KKLKTSTTEH AKKKPATDDE VKKISGEEAK KMFQRLFSET DEIAMLQGFL DFTSTRGDPY  180
ENMDAFCDYV KTLIDFNASK AQIVTKLQRC KRRFVNIGKT EIGVMLQDLD QKAFELSRKI  240
WGTNGVFPAK PRKKSKETKL LPSASPTHTR KEEKPMANAL NTHLSSSGEI ASFFKAENVS  300
VFGLDESTVS GNWDLVPDGP KKREMEEKLK KLKDTQVELC LQRTELVDTT AKMIYKDYAS  360
SSC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027016m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005322.10.0LOW QUALITY PROTEIN: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-104STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLV4MHI70.0V4MHI7_EUTSA; Uncharacterized protein
STRINGXP_006413329.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-98DNA-binding storekeeper protein-related transcriptional regulator