PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10027037m

Common Name

EUTSA_v10027037mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 342aa MW: 39904.1 Da PI: 10.0068

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10027037m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.3e-26	212	260	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Thhalv10027037m 212 GLSLEDLSKYFCVPIVEASRHLNVGLTVLKKKCREFGIPRWPHRKIKSL 260 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.997	195	280	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	213	260	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEHSLTSLAV FQSVFRKEVI RSLHVYGSVV VEREFLFERK SRYVEKKAEP LFRSEGLRLP 60 EISEGWVFGT WRCIFVFRFN HFLPRFPTLL CLSRNSKLED IPNLANELKF ISGLKPKKPS 120 MISDQEQCSR VKYCNFDQSK PLKLHFKEER VSDCEVDQPK PRKLVLKQDL NCLPDSETES 180 EETEDDQIEH SESDTKSEIL KKKRTPSELV AGLSLEDLSK YFCVPIVEAS RHLNVGLTVL 240 KKKCREFGIP RWPHRKIKSL DTLIHDLQEE AEKQLKKNKA AAMAVAKRQK ILEIEKRNIV 300 KRPFMEIQIE TKRFRQDNFK KRHRASRAKK NQESLVTSSS S*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEHSLTSLAV FQSVFRKEVI RSLHVYGSVV VEREFLFERK SRYVEKKAEP LFRSEGLRLP  60
EISEGWVFGT WRCIFVFRFN HFLPRFPTLL CLSRNSKLED IPNLANELKF ISGLKPKKPS  120
MISDQEQCSR VKYCNFDQSK PLKLHFKEER VSDCEVDQPK PRKLVLKQDL NCLPDSETES  180
EETEDDQIEH SESDTKSEIL KKKRTPSELV AGLSLEDLSK YFCVPIVEAS RHLNVGLTVL  240
KKKCREFGIP RWPHRKIKSL DTLIHDLQEE AEKQLKKNKA AAMAVAKRQK ILEIEKRNIV  300
KRPFMEIQIE TKRFRQDNFK KRHRASRAKK NQESLVTSSS S*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10027037m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	4e-70	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	4e-70	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	4e-70	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412085.1	0.0	protein RKD5
Swissprot	O81791	1e-170	RKD5_ARATH; Protein RKD5
TrEMBL	V4MLF6	0.0	V4MLF6_EUTSA; Uncharacterized protein
STRING	XP_006412085.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-153	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10027037m
Entrez Gene	18028272

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]